Articles with public access mandates - Pedro MendesLearn more
Not available anywhere: 2
Enzyme kinetics and computational modeling for systems biology
P Mendes, H Messiha, N Malys, S Hoops
Methods in enzymology 467, 583-599, 2009
Mandates: US National Institutes of Health
The markup is the model: reasoning about systems biology models in the Semantic Web era
DB Kell, P Mendes
Journal of Theoretical Biology 252 (3), 538-543, 2008
Mandates: British Heart Foundation
Available somewhere: 60
A community-driven global reconstruction of human metabolism
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...
Nature biotechnology 31 (5), 419-425, 2013
Mandates: US National Institutes of Health, Icelandic Centre for Research, UK …
ChEBI in 2016: Improved services and an expanding collection of metabolites
J Hastings, G Owen, A Dekker, M Ennis, N Kale, V Muthukrishnan, ...
Nucleic acids research 44 (D1), D1214-D1219, 2016
Mandates: UK Biotechnology and Biological Sciences Research Council
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ...
Nature biotechnology 26 (10), 1155-1160, 2008
Mandates: US National Institutes of Health
Controlled vocabularies and semantics in systems biology
M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ...
Molecular systems biology 7 (1), 543, 2011
Mandates: US National Institutes of Health
Recon 2.2: from reconstruction to model of human metabolism
N Swainston, K Smallbone, H Hefzi, PD Dobson, J Brewer, M Hanscho, ...
Metabolomics 12, 1-7, 2016
Mandates: US National Institutes of Health, UK Biotechnology and Biological Sciences …
Computational modeling of biochemical networks using COPASI
P Mendes, S Hoops, S Sahle, R Gauges, J Dada, U Kummer
Systems Biology, 17-59, 2009
Mandates: US National Institutes of Health
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
Mandates: US National Science Foundation, US Department of Energy, US National …
Path2Models: large-scale generation of computational models from biochemical pathway maps
F Büchel, N Rodriguez, N Swainston, C Wrzodek, T Czauderna, R Keller, ...
BMC systems biology 7, 1-19, 2013
Mandates: US National Institutes of Health, UK Biotechnology and Biological Sciences …
A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes
K Smallbone, HL Messiha, KM Carroll, CL Winder, N Malys, WB Dunn, ...
FEBS letters 587 (17), 2832-2841, 2013
Mandates: US National Institutes of Health, UK Biotechnology and Biological Sciences …
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ...
Briefings in bioinformatics 22 (2), 642-663, 2021
Mandates: US National Institutes of Health, German Research Foundation, European …
Systematic construction of kinetic models from genome-scale metabolic networks
NJ Stanford, T Lubitz, K Smallbone, E Klipp, P Mendes, W Liebermeister
PloS one 8 (11), e79195, 2013
Mandates: US National Institutes of Health, German Research Foundation, UK …
Bioinformatics tools for cancer metabolomics
G Blekherman, R Laubenbacher, DF Cortes, P Mendes, FM Torti, ...
Metabolomics 7, 329-343, 2011
Mandates: US National Institutes of Health
Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli
P Millard, K Smallbone, P Mendes
PLoS computational biology 13 (2), e1005396, 2017
Mandates: US National Institutes of Health, UK Biotechnology and Biological Sciences …
A systems biology view of cancer
R Laubenbacher, V Hower, A Jarrah, SV Torti, V Shulaev, P Mendes, ...
Biochimica et Biophysica Acta (BBA)-Reviews on Cancer 1796 (2), 129-139, 2009
Mandates: US National Institutes of Health
A general map of iron metabolism and tissue-specific subnetworks
V Hower, P Mendes, FM Torti, R Laubenbacher, S Akman, V Shulaev, ...
Molecular bioSystems 5 (5), 422-443, 2009
Mandates: US National Institutes of Health
Zinc depletion regulates the processing and secretion of IL-1β
H Summersgill, H England, G Lopez-Castejon, CB Lawrence, ...
Cell death & disease 5 (1), e1040-e1040, 2014
Mandates: UK Biotechnology and Biological Sciences Research Council, Wellcome Trust
COPASI and its applications in biotechnology
FT Bergmann, S Hoops, B Klahn, U Kummer, P Mendes, J Pahle, S Sahle
Journal of biotechnology 261, 215-220, 2017
Mandates: US National Institutes of Health, UK Biotechnology and Biological Sciences …
BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology
AF Villaverde, D Henriques, K Smallbone, S Bongard, J Schmid, ...
BMC systems biology 9, 1-15, 2015
Mandates: European Commission, Government of Spain
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