Tyler S. Alioto

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Jessica Gomez GarridoCNAGVerified email at cnag.eu
Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraVerified email at crg.cat
Fernando CruzCNAG-CRGVerified email at cnag.crg.eu
Anna Esteve-CodinaCNAGVerified email at cnag.eu
Toni GabaldonGroup Leader, Institute for Research in Biomedicine (IRB), Barcelona Supercomputing Centre (BSC)Verified email at crg.es
Marc DabadCNAGVerified email at cnag.eu
Ivo GutDirector, Centro Nacional de Analisis Genomico, CNAGVerified email at cnag.crg.eu
Tim HubbardHead Dept. Medical & Molecular Genetics, King's College London, Director of Bioinformatics, King'sVerified email at kcl.ac.uk
Marina Marcet-HoubenBarcelona Supercomputing Center - BSCVerified email at bsc.es
Paul BertoneBrown UniversityVerified email at brown.edu
Pär EngströmScience for Life Laboratory, Stockholm UniversityVerified email at scilifelab.se
Irene JulcaUniversity of Lausanne (UNIL)Verified email at unil.ch
Alberto Cuesta https://orcid.org/ 0000-...University of Murcia https://ror.org/03p3aeb86Verified email at um.es
Elena Chaves PozoInstituto Español de Oceanografía, CSICVerified email at ieo.es
Josep F Abril [ORCID: 0000-0001-779...Aggregate Professor; Dp Genetics, Microbiology & Statistics; Universitat de Barcelona (RoR021018s57)Verified email at ub.edu
Simon HeathSenior Team Leader, CNAG, Center Nacional de Análisis GenómicoVerified email at cnag.crg.es
Antonio FiguerasInstituto de Investigaciones Marinas. CSICVerified email at csic.es
Beatriz NovoaResearch Professor IIM-CSIC Vigo (Spain)Verified email at iim.csic.es
Pablo Vargas (ORCID: 0000-0003-45...Real Jardín BotánicoVerified email at rjb.csic.es
Alexandre ReymondDirector, Center for Integrative Genomics, University of Lausanne, SwitzerlandVerified email at unil.ch

Tyler S. Alioto

CNAG

Verified email at cnag.eu - Homepage

Bioinformatics gene prediction genome assembly


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Landscape of transcription in human cells S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ... Nature 489 (7414), 101-108, 2012	5647	2012
The tomato genome sequence provides insights into fleshy fruit evolution xx Tomato Genome Consortium Nature 485 (7400), 635, 2012	3305	2012
The genome sequence of taurine cattle: a window to ruminant biology and evolution Bovine Genome Sequencing and Analysis Consortium, CG Elsik, ... Science 324 (5926), 522-528, 2009	1154	2009
Genome Sequence of the Pea Aphid Acyrthosiphon pisum International Aphid Genomics Consortium PLoS biology 8 (2), e1000313, 2010	1000	2010
A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011	864	2011
The genome of melon (Cucumis melo L.) J Garcia-Mas, A Benjak, W Sanseverino, M Bourgeois, G Mir, ... Proceedings of the National Academy of Sciences 109 (29), 11872-11877, 2012	796	2012
Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013	781	2013
A user's guide to the encyclopedia of DNA elements (ENCODE) RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ... PLoS biology 9 (4), 2011	677	2011
Systematic evaluation of spliced alignment programs for RNA-seq data PG Engström, T Steijger, B Sipos, GR Grant, A Kahles, G Rätsch, ... Nature methods 10 (12), 1185-1191, 2013	605	2013
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing TS Alioto, I Buchhalter, S Derdak, B Hutter, MD Eldridge, E Hovig, ... Nature communications 6 (1), 1-13, 2015	333	2015
The genome sequence of taurine cattle: a window to ruminant biology and evolution TBG Sequencing, CG Elsik, RL Tellam, KC Worley, Analysis Consortium Science (New York, NY) 324 (5926), 522, 2009	297	2009
Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes A Vlasova, S Capella-Gutiérrez, M Rendón-Anaya, M Hernández-Oñate, ... Genome biology 17, 1-18, 2016	224	2016
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions F Denoeud, P Kapranov, C Ucla, A Frankish, R Castelo, J Drenkow, ... Genome research 17 (6), 746-759, 2007	224	2007
Genome sequence of the olive tree, Olea europaea F Cruz, I Julca, J Gómez-Garrido, D Loska, M Marcet-Houben, E Cano, ... Gigascience 5 (1), s13742-016-0134-5, 2016	214	2016
The odorant receptor repertoire of teleost fish TS Alioto, J Ngai BMC genomics 6, 1-14, 2005	200	2005
U12DB: a database of orthologous U12-type spliceosomal introns TS Alioto Nucleic acids research 35 (suppl_1), D110-D115, 2007	195	2007
The era of reference genomes in conservation genomics G Formenti, K Theissinger, C Fernandes, I Bista, A Bombarely, C Bleidorn, ... Trends in ecology & evolution 37 (3), 197-202, 2022	191	2022
Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life A Figueras, D Robledo, A Corvelo, M Hermida, P Pereiro, JA Rubiolo, ... DNA research 23 (3), 181-192, 2016	181	2016
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx F Abascal, A Corvelo, F Cruz, JL Villanueva-Cañas, A Vlasova, ... Genome biology 17, 1-19, 2016	179	2016
The genome sequence of taurine cattle: a window to ruminant biology and evolution. S Bovine Genome, CG Elsik, RL Tellam, KC Worley, RA Gibbs, DM Muzny, ... Science 324 (5926), 522-528, 2009	160	2009

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