Articles with public access mandates - Shujiro OkudaLearn more
Not available anywhere: 3
A metagenome-wide association study of gut microbiota in type 2 diabetes
J Qin, Y Li, Z Cai, S Li, J Zhu, F Zhang, S Liang, W Zhang, Y Guan, ...
nature 490 (7418), 55-60, 2012
Mandates: Danish Council for Independent Research, Danish Council for Strategic Research
The GlyCosmos Portal: a unified and comprehensive web resource for the glycosciences
I Yamada, M Shiota, D Shinmachi, T Ono, S Tsuchiya, M Hosoda, A Fujita, ...
Nature Methods 17 (7), 649-650, 2020
Mandates: US National Institutes of Health
Unique transcriptional profile of native persisters in Escherichia coli
S Matsumoto, Y Kawai, S Miyagawa, Y Iwamoto, S Okuda, ...
Journal of bioscience and bioengineering 125 (1), 15-22, 2018
Mandates: Government of Spain
Available somewhere: 40
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
EW Deutsch, A Csordas, Z Sun, A Jarnuczak, Y Perez-Riverol, T Ternent, ...
Nucleic acids research, gkw936, 2016
Mandates: US National Institutes of Health, UK Biotechnology and Biological Sciences …
The ProteomeXchange consortium in 2020: enabling ‘big data’approaches in proteomics
EW Deutsch, N Bandeira, V Sharma, Y Perez-Riverol, JJ Carver, ...
Nucleic acids research 48 (D1), D1145-D1152, 2020
Mandates: US National Science Foundation, US National Institutes of Health, UK …
Species–function relationships shape ecological properties of the human gut microbiome
S Vieira-Silva, G Falony, Y Darzi, G Lima-Mendez, R Garcia Yunta, ...
Nature microbiology 1 (8), 1-8, 2016
Mandates: Research Foundation (Flanders), European Commission
The ProteomeXchange consortium at 10 years: 2023 update
EW Deutsch, N Bandeira, Y Perez-Riverol, V Sharma, JJ Carver, ...
Nucleic acids research 51 (D1), D1539-D1548, 2023
Mandates: US National Science Foundation, US National Institutes of Health, National …
p62/SQSTM1-droplet serves as a platform for autophagosome formation and anti-oxidative stress response
S Kageyama, SR Gudmundsson, YS Sou, Y Ichimura, N Tamura, ...
Nature communications 12 (1), 16, 2021
Mandates: Academy of Finland
Autophagy regulates lipid metabolism through selective turnover of NCoR1
T Saito, A Kuma, Y Sugiura, Y Ichimura, M Obata, H Kitamura, S Okuda, ...
Nature communications 10 (1), 1567, 2019
Mandates: Swiss National Science Foundation
Next generation sequencing‐based gene panel tests for the management of solid tumors
M Nagahashi, Y Shimada, H Ichikawa, H Kameyama, K Takabe, S Okuda, ...
Cancer science 110 (1), 6-15, 2019
Mandates: US National Institutes of Health, Susan G. Komen
Molecular insight into evolution of symbiosis between breast-fed infants and a member of the human gut microbiome Bifidobacterium longum
C Yamada, A Gotoh, M Sakanaka, M Hattie, KA Stubbs, ...
Cell chemical biology 24 (4), 515-524. e5, 2017
Mandates: Australian Research Council
GlyTouCan 1.0–The international glycan structure repository
K Aoki-Kinoshita, S Agravat, NP Aoki, S Arpinar, RD Cummings, A Fujita, ...
Nucleic acids research 44 (D1), D1237-D1242, 2016
Mandates: US National Institutes of Health, UK Biotechnology and Biological Sciences …
Towards a standardized bioinformatics infrastructure for N- and O-glycomics
MA Rojas-Macias, J Mariethoz, P Andersson, C Jin, V Venkatakrishnan, ...
Nature communications 10 (1), 3275, 2019
Mandates: Swedish Research Council
Genomic landscape of colorectal cancer in Japan: clinical implications of comprehensive genomic sequencing for precision medicine
M Nagahashi, T Wakai, Y Shimada, H Ichikawa, H Kameyama, ...
Genome Medicine 8, 1-13, 2016
Mandates: US National Institutes of Health, Susan G. Komen
Actionable gene-based classification toward precision medicine in gastric cancer
H Ichikawa, M Nagahashi, Y Shimada, T Hanyu, T Ishikawa, ...
Genome Medicine 9, 1-12, 2017
Mandates: US National Institutes of Health, Susan G. Komen
GlycoRDF: an ontology to standardize glycomics data in RDF
R Ranzinger, KF Aoki-Kinoshita, MP Campbell, S Kawano, T Lütteke, ...
Bioinformatics 31 (6), 919-925, 2015
Mandates: US National Institutes of Health
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains
T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ...
Journal of biomedical semantics 5, 1-13, 2014
Mandates: US National Institutes of Health, UK Biotechnology and Biological Sciences …
Common driver mutations and smoking history affect tumor mutation burden in lung adenocarcinoma
M Nagahashi, S Sato, K Yuza, Y Shimada, H Ichikawa, S Watanabe, ...
journal of surgical research 230, 181-185, 2018
Mandates: US National Institutes of Health, Susan G. Komen
Novel therapeutic strategy for cervical cancer harboring FGFR3-TACC3 fusions
R Tamura, K Yoshihara, T Saito, R Ishimura, JE Martínez-Ledesma, H Xin, ...
Oncogenesis 7 (1), 4, 2018
Mandates: US National Institutes of Health
Introducing glycomics data into the Semantic Web
KF Aoki-Kinoshita, J Bolleman, MP Campbell, S Kawano, JD Kim, ...
Journal of Biomedical Semantics 4, 1-7, 2013
Mandates: US National Institutes of Health
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