| Calculating sample size estimates for RNA sequencing data SN Hart, TM Therneau, Y Zhang, GA Poland, JP Kocher Journal of computational biology 20 (12), 970-978, 2013 | 305 | 2013 |
| APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma B Leonard, SN Hart, MB Burns, MA Carpenter, NA Temiz, A Rathore, ... Cancer research 73 (24), 7222-7231, 2013 | 182 | 2013 |
| Cardiac transcriptome and dilated cardiomyopathy genes in zebrafish YH Shih, Y Zhang, Y Ding, CA Ross, H Li, TM Olson, X Xu Circulation: Cardiovascular Genetics 8 (2), 261-269, 2015 | 120 | 2015 |
| Network-based analysis of vaccine-related associations reveals consistent knowledge with the vaccine ontology Y Zhang, C Tao, Y He, P Kanjamala, H Liu Journal of biomedical semantics 4 (1), 1-8, 2013 | 118 | 2013 |
| Induction of an inflammatory loop by interleukin-1β and tumor necrosis factor-α involves NF-kB and STAT-1 in differentiated human neuroprogenitor cells S Pugazhenthi, Y Zhang, R Bouchard, G Mahaffey PloS one 8 (7), e69585, 2013 | 112 | 2013 |
| Regulation of c-Myc expression by the histone demethylase JMJD1A is essential for prostate cancer cell growth and survival L Fan, G Peng, N Sahgal, L Fazli, M Gleave, Y Zhang, A Hussain, J Qi Oncogene 35 (19), 2441-2452, 2016 | 102 | 2016 |
| MACE: model based analysis of ChIP-exo L Wang, J Chen, C Wang, L Uusküla-Reimand, K Chen, A Medina-Rivera, ... Nucleic acids research 42 (20), e156-e156, 2014 | 85 | 2014 |
| Identification of candidate genes for prostate cancer-risk SNPs utilizing a normal prostate tissue eQTL data set SN Thibodeau, AJ French, SK McDonnell, J Cheville, S Middha, ... Nature communications 6 (1), 1-10, 2015 | 77 | 2015 |
| TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data YW Asmann, S Middha, A Hossain, S Baheti, Y Li, HS Chai, Z Sun, ... Bioinformatics 28 (2), 277-278, 2012 | 76 | 2012 |
| Retinoblastoma binding protein 4 modulates temozolomide sensitivity in glioblastoma by regulating DNA repair proteins GJ Kitange, AC Mladek, MA Schroeder, JC Pokorny, BL Carlson, Y Zhang, ... Cell reports 14 (11), 2587-2598, 2016 | 75 | 2016 |
| Association between changes in gene signatures expression and disease activity among patients with systemic lupus erythematosus M Petri, W Fu, A Ranger, N Allaire, P Cullen, LS Magder, Y Zhang BMC medical genomics 12 (1), 1-9, 2019 | 74 | 2019 |
| Integrated urine proteomics and renal single-cell genomics identify an IFN-γ response gradient in lupus nephritis A Fava, J Buyon, C Mohan, T Zhang, HM Belmont, P Izmirly, R Clancy, ... JCI insight 5 (12), 2020 | 69 | 2020 |
| SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing Z Sun, S Baheti, S Middha, R Kanwar, Y Zhang, X Li, AS Beutler, E Klee, ... Bioinformatics 28 (16), 2180-2181, 2012 | 61 | 2012 |
| Reverse engineering module networks by PSO-RNN hybrid modeling Y Zhang, J Xuan, BG de los Reyes, R Clarke, HW Ressom BMC genomics 10 (1), 1-10, 2009 | 48 | 2009 |
| Research Resource: Whole Transcriptome RNA Sequencing Detects Multiple 1α,25-Dihydroxyvitamin D3-Sensitive Metabolic Pathways in Developing Zebrafish TA Craig, Y Zhang, MS McNulty, S Middha, H Ketha, RJ Singh, AT Magis, ... Molecular endocrinology 26 (9), 1630-1642, 2012 | 45 | 2012 |
| Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data Y Zhang, J Xuan, BG De Los Reyes, R Clarke, HW Ressom BMC bioinformatics 9 (1), 1-18, 2008 | 43 | 2008 |
| Network motif-based identification of breast cancer susceptibility genes Y Zhang, J Xuan, G Benilo, R Clarke, HW Ressom 2008 30th Annual International Conference of the IEEE Engineering in …, 2008 | 35 | 2008 |
| Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network Y Zhang, C Tao, G Jiang, AA Nair, J Su, CG Chute, H Liu Journal of biomedical semantics 5 (1), 1-13, 2014 | 34 | 2014 |
| Identification of aberrant pathways and network activities from high-throughput data J Wang, Y Zhang, C Marian, HW Ressom Briefings in Bioinformatics, 2012 | 34 | 2012 |
| Inference of gene regulatory networks from time course gene expression data using neural networks and swarm intelligence HW Ressom, Y Zhang, J Xuan, Y Wang, R Clarke 2006 IEEE Symposium on Computational Intelligence and Bioinformatics and …, 2006 | 34 | 2006 |
Cui TaoDepartment of AI and Informatics, Mayo ClinicVerified email at mayo.edu
