Articles with public access mandates - Andrew CarrollLearn more
Not available anywhere: 1
Inference of chronic obstructive pulmonary disease with deep learning on raw spirograms identifies new genetic loci and improves risk models
J Cosentino, B Behsaz, B Alipanahi, ZR McCaw, D Hill, TH Schwantes-An, ...
Nature Genetics 55 (5), 787-795, 2023
Mandates: US National Institutes of Health
Available somewhere: 42
A global reference for human genetic variation
1000 Genomes Project Consortium
Nature 526 (7571), 68, 2015
Mandates: US National Institutes of Health, Howard Hughes Medical Institute, Canadian …
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75-81, 2015
Mandates: US National Institutes of Health, German Research Foundation, European …
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature biotechnology 37 (10), 1155-1162, 2019
Mandates: US National Science Foundation, US National Institutes of Health, National …
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
Mandates: US National Science Foundation, US National Institutes of Health, US …
Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)
R Ming, R VanBuren, Y Liu, M Yang, Y Han, LT Li, Q Zhang, MJ Kim, ...
Genome biology 14, 1-11, 2013
Mandates: US National Institutes of Health
Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences
Nature genetics 48 (6), 593, 2016
Mandates: US National Science Foundation, US National Institutes of Health, Australian …
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
Mandates: US National Science Foundation, US Department of Energy, US National …
Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline
JG Reid, A Carroll, N Veeraraghavan, M Dahdouli, A Sundquist, A English, ...
BMC bioinformatics 15, 1-11, 2014
Mandates: US National Institutes of Health
XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan
D Chiniquy, V Sharma, A Schultink, EE Baidoo, C Rautengarten, K Cheng, ...
Proceedings of the National Academy of Sciences 109 (42), 17117-17122, 2012
Mandates: Danish Council for Independent Research
Pangenomics enables genotyping of known structural variants in 5202 diverse genomes
J Sirén, J Monlong, X Chang, AM Novak, JM Eizenga, C Markello, ...
Science 374 (6574), abg8871, 2021
Mandates: US National Institutes of Health, Carlsberg Foundation DK
Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads
K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ...
Nature methods 18 (11), 1322-1332, 2021
Mandates: US National Institutes of Health
Chromosome-scale, haplotype-resolved assembly of human genomes
S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ...
Nature biotechnology 39 (3), 309-312, 2021
Mandates: US National Institutes of Health
Assessing structural variation in a personal genome—towards a human reference diploid genome
AC English, WJ Salerno, OA Hampton, C Gonzaga-Jauregui, S Ambreth, ...
BMC genomics 16, 1-15, 2015
Mandates: US National Institutes of Health, Howard Hughes Medical Institute, Damon …
Accurate, scalable cohort variant calls using DeepVariant and GLnexus
T Yun, H Li, PC Chang, MF Lin, A Carroll, CY McLean
Bioinformatics 36 (24), 5582-5589, 2020
Mandates: US National Institutes of Health
PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions
ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ...
Cell genomics 2 (5), 2022
Mandates: US National Institutes of Health, Government of Spain
Benchmarking challenging small variants with linked and long reads
J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ...
Cell genomics 2 (5), 2022
Mandates: US National Institutes of Health, German Research Foundation, Federal …
WGSA: an annotation pipeline for human genome sequencing studies
X Liu, S White, B Peng, AD Johnson, JA Brody, AH Li, Z Huang, A Carroll, ...
Journal of medical genetics 53 (2), 111-112, 2016
Mandates: US National Institutes of Health
Analysis commons, a team approach to discovery in a big-data environment for genetic epidemiology
JA Brody, AC Morrison, JC Bis, JR O'Connell, MR Brown, JE Huffman, ...
Nature genetics 49 (11), 1560-1563, 2017
Mandates: US National Institutes of Health
Harmonizing clinical sequencing and interpretation for the eMERGE III network
H Zouk, E Venner, NJ Lennon, DM Muzny, D Abrams, S Adunyah, ...
The American Journal of Human Genetics 105 (3), 588-605, 2019
Mandates: US National Institutes of Health
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