Articles with public access mandates - RL WarrenLearn more
Not available anywhere: 3
A census of predicted mutational epitopes suitable for immunologic cancer control
RL Warren, RA Holt
Human immunology 71 (3), 245-254, 2010
Mandates: Canadian Institutes of Health Research, Genome Canada
Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph
BP Vandervalk, SD Jackman, A Raymond, H Mohamadi, C Yang, ...
2014 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2014
Mandates: US National Institutes of Health, Genome Canada
Spaced seed data structures
I Birol, H Mohamadi, A Raymond, K Raghavan, J Chu, BP Vandervalk, ...
2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2014
Mandates: US National Institutes of Health, Genome Canada
Available somewhere: 86
Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma
M Castellarin, RL Warren, JD Freeman, L Dreolini, M Krzywinski, ...
Genome research 22 (2), 299-306, 2012
Mandates: Canadian Institutes of Health Research, Genome Canada
Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution
SP Shah, RD Morin, J Khattra, L Prentice, T Pugh, A Burleigh, A Delaney, ...
Nature 461 (7265), 809-813, 2009
Mandates: Canadian Institutes of Health Research, Genome Canada
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse
MP McLeod, RL Warren, WWL Hsiao, N Araki, M Myhre, C Fernandes, ...
Proceedings of the National Academy of Sciences 103 (42), 15582-15587, 2006
Mandates: Genome Canada
Neo-antigens predicted by tumor genome meta-analysis correlate with increased patient survival
SD Brown, RL Warren, EA Gibb, SD Martin, JJ Spinelli, BH Nelson, ...
Genome research 24 (5), 743-750, 2014
Mandates: Canadian Institutes of Health Research
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
SD Jackman, BP Vandervalk, H Mohamadi, J Chu, S Yeo, SA Hammond, ...
Genome research 27 (5), 768-777, 2017
Mandates: US National Institutes of Health, Genome Canada
Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing
JD Freeman, RL Warren, JR Webb, BH Nelson, RA Holt
Genome research 19 (10), 1817-1824, 2009
Mandates: Genome Canada
Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million …
RL Warren, JD Freeman, T Zeng, G Choe, S Munro, R Moore, JR Webb, ...
Genome research 21 (5), 790-797, 2011
Mandates: Canadian Institutes of Health Research, Genome Canada
Co-occurrence of anaerobic bacteria in colorectal carcinomas
RL Warren, DJ Freeman, S Pleasance, P Watson, RA Moore, K Cochrane, ...
Microbiome 1, 1-12, 2013
Mandates: Canadian Institutes of Health Research, Genome Canada
Complete haplotype sequence of the human immunoglobulin heavy-chain variable, diversity, and joining genes and characterization of allelic and copy-number variation
CT Watson, KM Steinberg, J Huddleston, RL Warren, M Malig, J Schein, ...
The American Journal of Human Genetics 92 (4), 530-546, 2013
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads
RL Warren, C Yang, BP Vandervalk, B Behsaz, A Lagman, SJM Jones, ...
GigaScience 4 (1), s13742-015-0076-3, 2015
Mandates: US National Institutes of Health, Genome Canada
Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism
RL Warren, CI Keeling, MMS Yuen, A Raymond, GA Taylor, ...
The Plant Journal 83 (2), 189-212, 2015
Mandates: Genome Canada, Natural Sciences and Engineering Research Council of Canada
NanoSim: nanopore sequence read simulator based on statistical characterization
C Yang, J Chu, RL Warren, I Birol
GigaScience 6 (4), gix010, 2017
Mandates: US National Institutes of Health, Genome Canada
The cumate gene-switch: a system for regulated expression in mammalian cells
A Mullick, Y Xu, R Warren, M Koutroumanis, C Guilbault, S Broussau, ...
BMC biotechnology 6, 1-18, 2006
Mandates: Genome Canada
Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts
CA D’souza, JW Kronstad, G Taylor, R Warren, M Yuen, G Hu, WH Jung, ...
MBio 2 (1), 10.1128/mbio. 00342-10, 2011
Mandates: US National Institutes of Health, Howard Hughes Medical Institute, Canadian …
Derivation of HLA types from shotgun sequence datasets
RL Warren, G Choe, DJ Freeman, M Castellarin, S Munro, R Moore, ...
Genome medicine 4, 1-8, 2012
Mandates: Canadian Institutes of Health Research, Genome Canada
ARCS: scaffolding genome drafts with linked reads
S Yeo, L Coombe, RL Warren, J Chu, I Birol
Bioinformatics 34 (5), 725-731, 2018
Mandates: US National Institutes of Health, Genome Canada
Brain microbial populations in HIV/AIDS: α-proteobacteria predominate independent of host immune status
WG Branton, KK Ellestad, F Maingat, BM Wheatley, E Rud, RL Warren, ...
PloS one 8 (1), e54673, 2013
Mandates: Canadian Institutes of Health Research
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