Articles with public access mandates - Elena RivasLearn more
Available somewhere: 12
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
I Kalvari, J Argasinska, N Quinones-Olvera, EP Nawrocki, E Rivas, ...
Nucleic acids research 46 (D1), D335-D342, 2018
Mandates: US National Institutes of Health, Howard Hughes Medical Institute, UK …
Rfam 14: expanded coverage of metagenomic, viral and microRNA families
I Kalvari, EP Nawrocki, N Ontiveros-Palacios, J Argasinska, K Lamkiewicz, ...
Nucleic Acids Research 49 (D1), D192-D200, 2021
Mandates: US National Institutes of Health, German Research Foundation, UK …
A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs
E Rivas, J Clements, SR Eddy
Nature methods 14 (1), 45-48, 2017
Mandates: Howard Hughes Medical Institute
RNAcentral: a hub of information for non-coding RNA sequences
Nucleic Acids Research 47 (D1), D221-D229, 2019
Mandates: US Department of Energy, US National Institutes of Health, UK Biotechnology …
A range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and more
E Rivas, R Lang, SR Eddy
RNA 18 (2), 193-212, 2012
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
Probabilistic phylogenetic inference with insertions and deletions
E Rivas, SR Eddy
PLoS computational biology 4 (9), e1000172, 2008
Mandates: Howard Hughes Medical Institute
Estimating the power of sequence covariation for detecting conserved RNA structure
E Rivas, J Clements, SR Eddy
Bioinformatics 36 (10), 3072-3076, 2020
Mandates: Howard Hughes Medical Institute
The four ingredients of single-sequence RNA secondary structure prediction. A unifying perspective
E Rivas
RNA biology 10 (7), 1185-1196, 2013
Mandates: Howard Hughes Medical Institute
Parameterizing sequence alignment with an explicit evolutionary model
E Rivas, SR Eddy
BMC bioinformatics 16, 1-23, 2015
Mandates: Howard Hughes Medical Institute
Thirteen dubious ways to detect conserved structural RNAs
W Gao, A Yang, E Rivas
IUBMB life 75 (6), 471-492, 2023
Mandates: US National Institutes of Health
Discovery of 17 conserved structural RNAs in fungi
W Gao, TA Jones, E Rivas
Nucleic acids research 49 (11), 6128-6143, 2021
Mandates: Howard Hughes Medical Institute
RNA covariation at helix-level resolution for the identification of evolutionarily conserved RNA structure
E Rivas
PLOS Computational Biology 19 (7), e1011262, 2023
Mandates: US National Institutes of Health
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