Articles with public access mandates - Amy WillisLearn more
Available somewhere: 31
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
Mandates: US National Science Foundation, US National Institutes of Health, US …
Rarefaction, alpha diversity, and statistics
AD Willis
Frontiers in Microbiology 10, 2407, 2019
Mandates: US National Institutes of Health
Community-led, integrated, reproducible multi-omics with anvi’o
AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ...
Nature Microbiology 6 (1), 3-6, 2021
Mandates: US National Institutes of Health
Consistent and correctable bias in metagenomic sequencing experiments
MR McLaren, AD Willis, BJ Callahan
Elife 8, e46923, 2019
Mandates: US National Institutes of Health
Modeling microbial abundances and dysbiosis with beta-binomial regression
BD Martin, D Witten, AD Willis
Annals of Applied Statistics 14 (1), 94-115, 2020
Mandates: US National Science Foundation, US National Institutes of Health
Influencing the tumor microenvironment: A phase II study of copper depletion using tetrathiomolybdate in patients with breast cancer at high risk for recurrence and in …
N Chan, A Willis, N Kornhauser, MM Ward, SB Lee, E Nackos, BR Seo, ...
Clinical Cancer Research 23 (3), 666-676, 2017
Mandates: Susan G. Komen
Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome
A Shaiber, AD Willis, TO Delmont, S Roux, LX Chen, AC Schmid, ...
Genome biology 21, 1-35, 2020
Mandates: US Department of Energy, US National Institutes of Health
Estimating diversity in networked ecological communities
AD Willis, BD Martin
Biostatistics 23 (1), 207-222, 2022
Mandates: US National Institutes of Health
Follicle number, not assessments of the ovarian stroma, represents the best ultrasonographic marker of polycystic ovary syndrome
JP Christ, AD Willis, ED Brooks, HV Brink, BY Jarrett, RA Pierson, ...
Fertility and sterility 101 (1), 280-287. e1, 2014
Mandates: US National Institutes of Health, Canadian Institutes of Health Research
Segment number threshold determines juvenile onset of germline cluster expansion in Platynereis dumerilii
E Kuehn, DS Clausen, RW Null, BM Metzger, AD Willis, BD Özpolat
Journal of Experimental Zoology Part B: Molecular and Developmental …, 2022
Mandates: US National Institutes of Health
Genomic and functional characterization of a mucosal symbiont involved in early-stage colorectal cancer
MC Kordahi, IB Stanaway, M Avril, D Chac, MP Blanc, B Ross, C Diener, ...
Cell Host & Microbe 29 (10), 1589-1598. e6, 2021
Mandates: US National Institutes of Health
Lifetime mobility of an Arctic woolly mammoth
MJ Wooller, C Bataille, P Druckenmiller, GM Erickson, P Groves, ...
Science 373 (6556), 806-808, 2021
Mandates: US National Science Foundation, Natural Sciences and Engineering Research …
Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease
SS Minot, AD Willis
Microbiome 7 (1), 110, 2019
Mandates: US National Institutes of Health
Niche separation increases with genetic distance among bloom-forming cyanobacteria
N Tromas, ZE Taranu, BD Martin, A Willis, N Fortin, CW Greer, BJ Shapiro
Frontiers in microbiology 9, 438, 2018
Mandates: Natural Sciences and Engineering Research Council of Canada, European Commission
Estimation of cell lineage trees by maximum-likelihood phylogenetics
J Feng, WS DeWitt III, A McKenna, N Simon, AD Willis, FA Matsen IV
The Annals of Applied Statistics 15 (1), 343-362, 2021
Mandates: US National Science Foundation, US National Institutes of Health, Howard …
A multiview model for relative and absolute microbial abundances
BD Williamson, JP Hughes, AD Willis
Biometrics 78 (3), 1181-1194, 2022
Mandates: US National Institutes of Health
Evaluating replicability in microbiome data
DS Clausen, AD Willis
Biostatistics 23 (4), 1099-1114, 2022
Mandates: US National Institutes of Health
Sonographic markers of ovarian morphology, but not hirsutism indices, predict serum total testosterone in women with regular menstrual cycles
HV Brink, AD Willis, BY Jarrett, AW Lin, S Soler, S Best, EL Bender, ...
Fertility and sterility 105 (5), 1322-1329. e1, 2016
Mandates: US National Institutes of Health, US Department of Agriculture
Microbes with higher metabolic independence are enriched in human gut microbiomes under stress
I Veseli, YT Chen, MS Schechter, C Vanni, EC Fogarty, AR Watson, ...
bioRxiv, 2023
Mandates: US National Science Foundation, US National Institutes of Health
Rigorous Statistical Methods for Rigorous Microbiome Science
AD Willis
mSystems 4 (3), e00117-19, 2019
Mandates: US National Institutes of Health
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