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Yijun Ruan
Yijun Ruan
Professor and Director, Genomic Sciences
Verified email at jax.org
Title
Cited by
Cited by
Year
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
60682007
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
56352012
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ...
Genome research 22 (9), 1775-1789, 2012
53982012
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
science 309 (5740), 1559-1563, 2005
40922005
The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
YH Loh, Q Wu, JL Chew, VB Vega, W Zhang, X Chen, G Bourque, ...
Nature genetics 38 (4), 431-440, 2006
30452006
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
X Chen, H Xu, P Yuan, F Fang, M Huss, VB Vega, E Wong, YL Orlov, ...
Cell 133 (6), 1106-1117, 2008
29642008
An oestrogen-receptor-α-bound human chromatin interactome
MJ Fullwood, MH Liu, YF Pan, J Liu, H Xu, YB Mohamed, YL Orlov, ...
Nature 462 (7269), 58-64, 2009
19832009
A global map of p53 transcription-factor binding sites in the human genome
CL Wei, Q Wu, VB Vega, KP Chiu, P Ng, T Zhang, A Shahab, HC Yong, ...
Cell 124 (1), 207-219, 2006
14552006
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
G Li, X Ruan, RK Auerbach, KS Sandhu, M Zheng, P Wang, HM Poh, ...
Cell 148 (1), 84-98, 2012
13612012
Functional metagenomic profiling of nine biomes
EA Dinsdale, RA Edwards, D Hall, F Angly, M Breitbart, JM Brulc, ...
Nature 452 (7187), 629-632, 2008
11252008
The draft genome of sweet orange (Citrus sinensis)
Q Xu, LL Chen, X Ruan, D Chen, A Zhu, C Chen, D Bertrand, WB Jiao, ...
Nature genetics 45 (1), 59-66, 2013
10792013
CTCF-mediated human 3D genome architecture reveals chromatin topology for transcription
Z Tang, OJ Luo, X Li, M Zheng, JJ Zhu, P Szalaj, P Trzaskoma, ...
Cell 163 (7), 1611-1627, 2015
9982015
RNA viral community in human feces: prevalence of plant pathogenic viruses
T Zhang, M Breitbart, WH Lee, JQ Run, CL Wei, SWL Soh, ML Hibberd, ...
PLoS biology 4 (1), e3, 2006
8622006
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
S Schoenfelder, T Sexton, L Chakalova, NF Cope, A Horton, S Andrews, ...
Nature genetics 42 (1), 53-61, 2010
8262010
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
DS Gerhard, L Wagner, EA Feingold, CM Shenmen, LH Grouse, ...
Genome research 14 (10B), 2121-2127, 2004
8202004
CTCF-mediated functional chromatin interactome in pluripotent cells
L Handoko, H Xu, G Li, CY Ngan, E Chew, M Schnapp, CWH Lee, C Ye, ...
Nature genetics 43 (7), 630-638, 2011
7632011
Comparative full-length genome sequence analysis of 14 SARS coronavirus isolates and common mutations associated with putative origins of infection
YJ Ruan, CL Wei, AE Ling, VB Vega, H Thoreau, SYS Thoe, JM Chia, ...
The Lancet 361 (9371), 1779-1785, 2003
7112003
Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes
ZJ Zang, I Cutcutache, SL Poon, SL Zhang, JR McPherson, J Tao, ...
Nature genetics 44 (5), 570-574, 2012
7002012
A user's guide to the encyclopedia of DNA elements (ENCODE)
RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ...
PLoS biology 9 (4), 2011
6772011
A common BIM deletion polymorphism mediates intrinsic resistance and inferior responses to tyrosine kinase inhibitors in cancer
KP Ng, AM Hillmer, CTH Chuah, WC Juan, TK Ko, ASM Teo, ...
Nature medicine 18 (4), 521-528, 2012
6722012
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