| Classifying and comparing approaches to subspace clustering with missing data C Lane, R Boger, C You, M Tsakiris, B Haeffele, R Vidal Proceedings of the IEEE/CVF International Conference on Computer Vision …, 2019 | 19 | 2019 |
| CasPEDIA Database: a functional classification system for class 2 CRISPR-Cas enzymes BA Adler, MI Trinidad, D Bellieny-Rabelo, E Zhang, HM Karp, ... Nucleic acids research 52 (D1), D590-D596, 2024 | 10 | 2024 |
| Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes PH Yoon, P Skopintsev, H Shi, LX Chen, BA Adler, M Al-Shimary, ... Nucleic Acids Research 51 (22), 12414-12427, 2023 | 9 | 2023 |
| Genome-wide characterization of diverse bacteriophages enabled by RNA-binding CRISPRi BA Adler, MJ Al-Shimary, JR Patel, E Armbruster, D Colognori, EJ Charles, ... bioRxiv, 2023.09. 18.558157, 2023 | 5 | 2023 |
| Crispr2vec: machine learning model predicts off-target cuts of crispr systems TB Trivedi, R Boger, GM Kamath, G Evangelopoulos, J Cate, J Doudna, ... BioRxiv, 2020.10. 28.359885, 2020 | 5 | 2020 |
| RNA language models predict mutations that improve RNA function Y Shulgina, MI Trinidad, CJ Langeberg, H Nisonoff, S Chithrananda, ... bioRxiv, 2024 | 2 | 2024 |
| TOPH (True Retrieval Of Proteins Homologs): Adapting A Contrastive Question-Answering Framework for Protein Search R Boger, A Lu, S Chithrananda, K Yang, P Skopintsev, B Adler, E Wallace, ... ICML Workshop on Computational Biology, 2023 | 2 | 2023 |
| Structure-guided discovery of ancestral CRISPR-Cas13 ribonucleases PH Yoon, Z Zhang, KJ Loi, BA Adler, A Lahiri, K Vohra, H Shi, DB Rabelo, ... Science 385 (6708), 538-543, 2024 | | 2024 |
| Functional protein mining with conformal guarantees RS Boger, S Chithrananda, AN Angelopoulos, PH Yoon, MI Jordan, ... bioRxiv, 2024.06. 27.601042, 2024 | | 2024 |
Jennifer DoudnaProfessor of Molecular and Cell Biology and Chemistry, UC BerkeleyVerified email at berkeley.edu