Articles with public access mandates - Benoit BallesterLearn more
Available somewhere: 27
JASPAR 2020: update of the open-access database of transcription factor binding profiles
O Fornes, JA Castro-Mondragon, A Khan, R Van der Lee, X Zhang, ...
Nucleic acids research 48 (D1), D87-D92, 2020
Mandates: Canadian Institutes of Health Research, Genome Canada, Natural Sciences and …
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ...
Nucleic acids research 46 (D1), D260-D266, 2018
Mandates: Research Foundation (Flanders), Canadian Institutes of Health Research …
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles
JA Castro-Mondragon, R Riudavets-Puig, I Rauluseviciute, ...
Nucleic acids research 50 (D1), D165-D173, 2022
Mandates: US National Institutes of Health, Canadian Institutes of Health Research …
BioMart–biological queries made easy
D Smedley, S Haider, B Ballester, R Holland, D London, G Thorisson, ...
BMC genomics 10, 1-12, 2009
Mandates: Ontario Institute for Cancer Research
Ensembl 2009
TJP Hubbard, BL Aken, S Ayling, B Ballester, K Beal, E Bragin, S Brent, ...
Nucleic acids research 37 (suppl_1), D690-D697, 2009
Mandates: US National Institutes of Health
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding
D Schmidt, MD Wilson, B Ballester, PC Schwalie, GD Brown, A Marshall, ...
Science 328 (5981), 1036-1040, 2010
Mandates: Swiss National Science Foundation, Cancer Research UK
Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages
D Schmidt, PC Schwalie, MD Wilson, B Ballester, Â Gonçalves, C Kutter, ...
Cell 148 (1), 335-348, 2012
Mandates: Swiss National Science Foundation, Cancer Research UK
BioMart Central Portal—unified access to biological data
S Haider, B Ballester, D Smedley, J Zhang, P Rice, A Kasprzyk
Nucleic acids research 37 (suppl_2), W23-W27, 2009
Mandates: Ontario Institute for Cancer Research
Ensembl's 10th year
P Flicek, BL Aken, B Ballester, K Beal, E Bragin, S Brent, Y Chen, ...
Nucleic acids research 38 (suppl_1), D557-D562, 2010
Mandates: US National Institutes of Health
ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments
J Chèneby, M Gheorghe, M Artufel, A Mathelier, B Ballester
Nucleic acids research 46 (D1), D267-D275, 2018
Mandates: National Institute of Health and Medical Research, France, Research Council …
ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments
F Hammal, P De Langen, A Bergon, F Lopez, B Ballester
Nucleic acids research 50 (D1), D316-D325, 2022
Mandates: National Institute of Health and Medical Research, France, Agence Nationale …
The chromatin environment shapes DNA replication origin organization and defines origin classes
C Cayrou, B Ballester, I Peiffer, R Fenouil, P Coulombe, JC Andrau, ...
Genome research 25 (12), 1873-1885, 2015
Mandates: European Commission
Involvement of G-quadruplex regions in mammalian replication origin activity
P Prorok, M Artufel, A Aze, P Coulombe, I Peiffer, L Lacroix, A Guédin, ...
Nature communications 10 (1), 3274, 2019
Mandates: European Commission
High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq
L Vanhille, A Griffon, MA Maqbool, J Zacarias-Cabeza, LTM Dao, ...
Nature communications 6 (1), 6905, 2015
Mandates: National Institute of Health and Medical Research, France
ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments
J Chèneby, Z Ménétrier, M Mestdagh, T Rosnet, A Douida, W Rhalloussi, ...
Nucleic acids research 48 (D1), D180-D188, 2020
Mandates: National Institute of Health and Medical Research, France, Agence Nationale …
Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape
A Griffon, Q Barbier, J Dalino, J van Helden, S Spicuglia, B Ballester
Nucleic acids research 43 (4), e27-e27, 2015
Mandates: National Institute of Health and Medical Research, France
Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways
B Ballester, A Medina-Rivera, D Schmidt, M Gonzàlez-Porta, M Carlucci, ...
Elife 3, e02626, 2014
Mandates: Swiss National Science Foundation, Heart and Stroke Foundation of Canada …
A map of direct TF–DNA interactions in the human genome
M Gheorghe, GK Sandve, A Khan, J Chèneby, B Ballester, A Mathelier
Nucleic acids research 47 (4), e21-e21, 2019
Mandates: Research Council of Norway
Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study
G Ambrosini, I Vorontsov, D Penzar, R Groux, O Fornes, DD Nikolaeva, ...
Genome biology 21, 1-18, 2020
Mandates: European Commission
A predictable conserved DNA base composition signature defines human core DNA replication origins
I Akerman, B Kasaai, A Bazarova, PB Sang, I Peiffer, M Artufel, R Derelle, ...
Nature communications 11 (1), 4826, 2020
Mandates: Diabetes UK, Agence Nationale de la Recherche
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