Articles with public access mandates - Ivo HofackerLearn more
Not available anywhere: 9
Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics
SA Müller, S Findeiß, SR Pernitzsch, DK Wissenbach, PF Stadler, ...
Journal of proteomics 86, 27-42, 2013
Mandates: German Research Foundation
Predicting RNA structure: advances and limitations
IL Hofacker, R Lorenz
RNA folding: methods and protocols, 1-19, 2014
Mandates: Austrian Science Fund
Comparative RNA genomics
R Backofen, J Gorodkin, IL Hofacker, PF Stadler
Comparative Genomics: Methods and Protocols, 363-400, 2018
Mandates: German Research Foundation, Danish Council for Independent Research …
Concepts and introduction to RNA bioinformatics
J Gorodkin, IL Hofacker, WL Ruzzo
RNA Sequence, Structure, and Function: Computational and Bioinformatic …, 2014
Mandates: Danish Council for Independent Research, Danish Council for Strategic Research
Efficient algorithms for co-folding of multiple RNAs
R Lorenz, C Flamm, IL Hofacker, PF Stadler
International Joint Conference on Biomedical Engineering Systems and …, 2020
Mandates: Austrian Science Fund, Federal Ministry of Education and Research, Germany
Phylogenetic information as soft constraints in RNA secondary structure prediction
S von Löhneysen, T Spicher, Y Varenyk, HT Yao, R Lorenz, I Hofacker, ...
International Symposium on Bioinformatics Research and Applications, 267-279, 2023
Mandates: Austrian Science Fund
Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction
S von Löhneysen, T Spicher, Y Varenyk, HT Yao, R Lorenz, I Hofacker, ...
Journal of Computational Biology 31 (6), 549-563, 2024
Mandates: Austrian Science Fund
RNAs Everywhere
R Backofen, A Mosig, SJ Prohaska, D Rose, PF Stadler, A Tanzer, ...
Mandates: German Research Foundation
Comparative Analysis of Cyclic Sequences
A Mosig, IL Hofacker, PF Stadler
Mandates: German Research Foundation
Available somewhere: 108
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
Mandates: German Research Foundation
ViennaRNA Package 2.0
R Lorenz, SH Bernhart, C Höner zu Siederdissen, H Tafer, C Flamm, ...
Algorithms for molecular biology 6, 1-14, 2011
Mandates: Austrian Science Fund, German Research Foundation
RNAalifold: improved consensus structure prediction for RNA alignments
SH Bernhart, IL Hofacker, S Will, AR Gruber, PF Stadler
BMC bioinformatics 9, 1-13, 2008
Mandates: German Research Foundation
Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering
S Will, K Reiche, IL Hofacker, PF Stadler, R Backofen
PLoS computational biology 3 (4), e65, 2007
Mandates: German Research Foundation
Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams
P Kerpedjiev, S Hammer, IL Hofacker
Bioinformatics 31 (20), 3377-3379, 2015
Mandates: Austrian Science Fund
Thermodynamics of RNA–RNA binding
U Mückstein, H Tafer, J Hackermüller, SH Bernhart, PF Stadler, ...
Bioinformatics 22 (10), 1177-1182, 2006
Mandates: German Research Foundation
LocARNA-P: accurate boundary prediction and improved detection of structural RNAs
S Will, T Joshi, IL Hofacker, PF Stadler, R Backofen
Rna 18 (5), 900-914, 2012
Mandates: German Research Foundation
The expansion of the metazoan microRNA repertoire
J Hertel, M Lindemeyer, K Missal, C Fried, A Tanzer, C Flamm, ...
BMC genomics 7, 1-15, 2006
Mandates: German Research Foundation
Partition function and base pairing probabilities of RNA heterodimers
SH Bernhart, H Tafer, U Mückstein, C Flamm, PF Stadler, IL Hofacker
Algorithms for Molecular Biology 1, 1-10, 2006
Mandates: German Research Foundation
Memory efficient folding algorithms for circular RNA secondary structures
IL Hofacker, PF Stadler
Bioinformatics 22 (10), 1172-1176, 2006
Mandates: German Research Foundation
RNAz 2.0: improved noncoding RNA detection
AR Gruber, S Findeiß, S Washietl, IL Hofacker, PF Stadler
Biocomputing 2010, 69-79, 2010
Mandates: German Research Foundation
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