Articles with public access mandates - Ali BashashatiLearn more
Not available anywhere: 5
Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer
A McPherson, A Roth, E Laks, T Masud, A Bashashati, AW Zhang, G Ha, ...
Nature genetics 48 (7), 758-767, 2016
Mandates: Canadian Cancer Society, Canadian Institutes of Health Research, Genome …
Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes
YK Wang, A Bashashati, MS Anglesio, DR Cochrane, DS Grewal, G Ha, ...
Nature genetics 49 (6), 856-865, 2017
Mandates: Canadian Cancer Society, Canadian Institutes of Health Research, Fonds de …
The utility of color normalization for ai‐based diagnosis of hematoxylin and eosin‐stained pathology images
J Boschman, H Farahani, A Darbandsari, P Ahmadvand, ...
The Journal of Pathology 256 (1), 15-24, 2022
Mandates: Canadian Institutes of Health Research, Natural Sciences and Engineering …
Harmonized molecular classification; assessment of a single-test ProMisE NGS tool
A Jamieson, MK McConechy, A Lum, S Leung, EF Thompson, J Senz, ...
Gynecologic Oncology 175, 45-52, 2023
Mandates: Canadian Institutes of Health Research, Michael Smith Foundation for Health …
Reduction in multi-lineage and erythroid progenitors distinguishes myelodysplastic syndromes from non-malignant cytopenias
SM Vercauteren, A Bashashati, D Wu, RR Brinkman, C Eaves, A Eaves, ...
Leukemia research 33 (12), 1636-1642, 2009
Mandates: Canadian Institutes of Health Research
Available somewhere: 49
The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups
C Curtis, SP Shah, SF Chin, G Turashvili, OM Rueda, MJ Dunning, ...
Nature 486 (7403), 346-352, 2012
Mandates: US National Institutes of Health, Cancer Research UK
The clonal and mutational evolution spectrum of primary triple-negative breast cancers
SP Shah, A Roth, R Goya, A Oloumi, G Ha, Y Zhao, G Turashvili, J Ding, ...
Nature 486 (7403), 395-399, 2012
Mandates: US National Institutes of Health, Cancer Research UK
Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution
P Eirew, A Steif, J Khattra, G Ha, D Yap, H Farahani, K Gelmon, S Chia, ...
Nature 518 (7539), 422-426, 2015
Mandates: Canadian Cancer Society, Canadian Institutes of Health Research, Genome …
Distinct evolutionary trajectories of primary high‐grade serous ovarian cancers revealed through spatial mutational profiling
A Bashashati, G Ha, A Tone, J Ding, LM Prentice, A Roth, J Rosner, ...
The Journal of pathology 231 (1), 21-34, 2013
Mandates: Canadian Institutes of Health Research
TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data
G Ha, A Roth, J Khattra, J Ho, D Yap, LM Prentice, N Melnyk, ...
Genome research 24 (11), 1881-1893, 2014
Mandates: Canadian Cancer Society, Canadian Institutes of Health Research, Genome Canada
Double-hit gene expression signature defines a distinct subgroup of germinal center B-cell-like diffuse large B-cell lymphoma
D Ennishi, A Jiang, M Boyle, B Collinge, BM Grande, S Ben-Neriah, ...
Journal of Clinical Oncology 37 (3), 190-201, 2019
Mandates: US National Institutes of Health, Canadian Cancer Society, Canadian …
Interfaces of malignant and immunologic clonal dynamics in ovarian cancer
AW Zhang, A McPherson, K Milne, DR Kroeger, PT Hamilton, A Miranda, ...
Cell 173 (7), 1755-1769. e22, 2018
Mandates: Canadian Cancer Society, Canadian Institutes of Health Research, Genome …
Molecular and genetic characterization of MHC deficiency identifies EZH2 as therapeutic target for enhancing immune recognition
D Ennishi, K Takata, W Béguelin, G Duns, A Mottok, P Farinha, ...
Cancer discovery 9 (4), 546-563, 2019
Mandates: Canadian Institutes of Health Research, Genome Canada, Natural Sciences and …
Histological transformation and progression in follicular lymphoma: a clonal evolution study
R Kridel, FC Chan, A Mottok, M Boyle, P Farinha, K Tan, B Meissner, ...
PLoS medicine 13 (12), e1002197, 2016
Mandates: Natural Sciences and Engineering Research Council of Canada, Michael Smith …
JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data
A Roth, J Ding, R Morin, A Crisan, G Ha, R Giuliany, A Bashashati, M Hirst, ...
Bioinformatics 28 (7), 907-913, 2012
Mandates: Canadian Institutes of Health Research
Feature-based classifiers for somatic mutation detection in tumour–normal paired sequencing data
J Ding, A Bashashati, A Roth, A Oloumi, K Tse, T Zeng, G Haffari, M Hirst, ...
Bioinformatics 28 (2), 167-175, 2012
Mandates: Canadian Institutes of Health Research
Diffuse large B-cell lymphoma: reduced CD20 expression is associated with an inferior survival
NA Johnson, M Boyle, A Bashashati, S Leach, A Brooks-Wilson, LH Sehn, ...
Blood, The Journal of the American Society of Hematology 113 (16), 3773-3780, 2009
Mandates: US National Institutes of Health, Canadian Institutes of Health Research
Regulation of pH by carbonic anhydrase 9 mediates survival of pancreatic cancer cells with activated KRAS in response to hypoxia
PC McDonald, SC Chafe, WS Brown, S Saberi, M Swayampakula, ...
Gastroenterology 157 (3), 823-837, 2019
Mandates: Canadian Cancer Society, Canadian Institutes of Health Research
Synchronous endometrial and ovarian carcinomas: evidence of clonality
MS Anglesio, YK Wang, M Maassen, HM Horlings, A Bashashati, J Senz, ...
Journal of the National Cancer Institute 108 (6), djv428, 2016
Mandates: Canadian Cancer Society, Dutch Cancer Society
A survey of flow cytometry data analysis methods
A Bashashati, RR Brinkman
Advances in bioinformatics 2009 (1), 584603, 2009
Mandates: US National Institutes of Health
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