Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 15219 | 2019 |
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 979 | 2018 |
Beyond antioxidant genes in the ancient Nrf2 regulatory network SE Lacher, JS Lee, X Wang, MR Campbell, DA Bell, M Slattery Free Radical Biology and Medicine 88, 452-465, 2015 | 83 | 2015 |
DNA-binding sequence specificity of DUX4 Y Zhang, JK Lee, EA Toso, JS Lee, SH Choi, M Slattery, H Aihara, M Kyba Skeletal muscle 6, 1-11, 2015 | 41 | 2015 |
Functional classification of protein 3D structures from predicted local interaction sites R Parasuram, JS Lee, P Yin, S Somarowthu, MJ Ondrechen Journal of bioinformatics and computational biology 8 (supp01), 1-15, 2010 | 26 | 2010 |
Protein function annotation with structurally aligned local sites of activity (SALSAs) Z Wang, P Yin, JS Lee, R Parasuram, S Somarowthu, MJ Ondrechen BMC bioinformatics 14, 1-9, 2013 | 25 | 2013 |
Creb A increases secretory capacity through direct transcriptional regulation of the secretory machinery, a subset of secretory cargo, and other key regulators DM Johnson, MB Wells, R Fox, JS Lee, R Loganathan, D Levings, ... Traffic 21 (9), 560-577, 2020 | 24 | 2020 |
Protein function prediction for omics era D Kihara Springer Science & Business Media, 2011 | 22 | 2011 |
Design and evaluation of xanthine based adenosine receptor antagonists: Potential hypoxia targeted immunotherapies R Thomas, J Lee, V Chevalier, S Sadler, K Selesniemi, S Hatfield, ... Bioorganic & medicinal chemistry 21 (23), 7453-7464, 2013 | 18 | 2013 |
Ribbon regulates morphogenesis of the Drosophila embryonic salivary gland through transcriptional activation and repression R Loganathan, JS Lee, MB Wells, E Grevengoed, M Slattery, DJ Andrew Developmental biology 409 (1), 234-250, 2016 | 15 | 2016 |
Functional classification of protein structures by local structure matching in graph representation CL Mills, R Garg, JS Lee, L Tian, A Suciu, GD Cooperman, PJ Beuning, ... Protein Science 27 (6), 1125-1135, 2018 | 10 | 2018 |
Volatile profile survey of five apple varieties grown in Southwest Colorado from juice to finished, dry-hopped cider JL Hinkley, MT Bingman, JS Lee, CP Bradley, CA Cole Journal of the American Society of Brewing Chemists 81 (1), 131-140, 2023 | 7 | 2023 |
Diversifying the genomic data science research community R Alcazar, M Alvarez, R Arnold, M Ayalew, LG Best, MC Campbell, ... Genome Research 32 (7), 1231-1241, 2022 | 3 | 2022 |
Electrostatic Properties for Protein Functional Site Prediction JS Lee, MJ Ondrechen Protein Function Prediction for Omics Era, 183-196, 2011 | 1 | 2011 |
Monitoring environmental microbiomes: Alignment of microbiology and computational biology competencies within a culturally integrated curriculum and research framework JS Lee, JL Lowell, K Whitewater, TM Roane, CS Miller, AP Chan, ... Molecular Ecology Resources, 2023 | | 2023 |
Diversifying the Genomic Data Science Research Community TGDSC Network, R Alcazar, M Alvarez, R Arnold, M Ayalew, LG Best, ... arXiv preprint arXiv:2201.08443, 2022 | | 2022 |
Functional assignment of Structural Genomics proteins through computed chemical properties, graph representation of active sites, and biochemical validation CL Mills, R Garg, JS Lee, R Parasuram, L Tian, A Suciu, G Cooperman, ... The FASEB Journal 32, lb94-lb94, 2018 | | 2018 |