Articles with public access mandates - Jeremy D. DeBarryLearn more
Available somewhere: 23
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
Y Wang, H Tang, JD DeBarry, X Tan, J Li, X Wang, T Lee, H Jin, B Marler, ...
Nucleic acids research 40 (7), e49-e49, 2012
Mandates: US National Institutes of Health
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants
JA Banks, T Nishiyama, M Hasebe, JL Bowman, M Gribskov, ...
science 332 (6032), 960-963, 2011
Mandates: US National Institutes of Health, German Research Foundation
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center
B Amos, C Aurrecoechea, M Barba, A Barreto, EY Basenko, R Belnap, ...
Nucleic acids research 50 (D1), D898-D911, 2022
Mandates: US National Institutes of Health, Wellcome Trust
Theileria parasites secrete a prolyl isomerase to maintain host leukocyte transformation
J Marsolier, M Perichon, JD DeBarry, BO Villoutreix, J Chluba, T Lopez, ...
Nature 520 (7547), 378-382, 2015
Mandates: US National Institutes of Health, Worldwide Cancer Research, UK
Applied genomics: data mining reveals species-specific malaria diagnostic targets more sensitive than 18S rRNA
A Demas, J Oberstaller, J DeBarry, NW Lucchi, G Srinivasamoorthy, ...
Journal of clinical microbiology 49 (7), 2411-2418, 2011
Mandates: US National Institutes of Health
The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution
MC Estep, JD DeBarry, JL Bennetzen
Heredity 110 (2), 194-204, 2013
Mandates: US National Institutes of Health
Jumbled genomes: missing Apicomplexan synteny
JD DeBarry, JC Kissinger
Molecular biology and evolution 28 (10), 2855-2871, 2011
Mandates: US National Institutes of Health
A new single-step PCR assay for the detection of the zoonotic malaria parasite Plasmodium knowlesi
NW Lucchi, M Poorak, J Oberstaller, J DeBarry, G Srinivasamoorthy, ...
PLoS One 7 (2), e31848, 2012
Mandates: US National Institutes of Health
The Genome of Haemoproteus tartakovskyi and Its Relationship to Human Malaria Parasites
S Bensch, B Canbäck, JD DeBarry, T Johansson, O Hellgren, ...
Genome Biology and Evolution 8 (5), 1361-1373, 2016
Mandates: Swedish Research Council
Genome cartography: charting the apicomplexan genome
JC Kissinger, J DeBarry
Trends in parasitology 27 (8), 345-354, 2011
Mandates: US National Institutes of Health
Distinct amino acid and lipid perturbations characterize acute versus chronic malaria
RJ Cordy, R Patrapuvich, LN Lili, M Cabrera-Mora, JT Chien, GK Tharp, ...
JCI insight 4 (9), 2019
Mandates: US Department of Defense, US National Institutes of Health
PacBio assembly of a Plasmodium knowlesi genome sequence with Hi-C correction and manual annotation of the SICAvar gene family
SA Lapp, JA Geraldo, JT Chien, F Ay, SB Pakala, G Batugedara, ...
Parasitology 145 (1), 71-84, 2018
Mandates: US National Institutes of Health, Wellcome Trust
Assembly of highly repetitive genomes using short reads: the genome of discrete typing unit III Trypanosoma cruzi strain 231
RP Baptista, JL Reis-Cunha, JD DeBarry, E Chiari, JC Kissinger, ...
Microbial genomics 4 (4), e000156, 2018
Mandates: US National Institutes of Health
Humoral immunity prevents clinical malaria during Plasmodium relapses without eliminating gametocytes
CJ Joyner, CFA Brito, CL Saney, R Joice Cordy, ML Smith, SA Lapp, ...
PLoS Pathogens 15 (9), e1007974, 2019
Mandates: US National Institutes of Health
Integrative analysis associates monocytes with insufficient erythropoiesis during acute Plasmodium cynomolgi malaria in rhesus macaques
Y Tang, CJ Joyner, M Cabrera-Mora, CL Saney, SA Lapp, MV Nural, ...
Malaria journal 16, 1-16, 2017
Mandates: US National Institutes of Health
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023
J Alvarez-Jarreta, B Amos, C Aurrecoechea, S Bah, M Barba, A Barreto, ...
Nucleic acids research 52 (D1), D808-D816, 2024
Mandates: Wellcome Trust
Comparative transcriptomics and metabolomics in a rhesus macaque drug administration study
KJ Lee, W Yin, D Arafat, Y Tang, K Uppal, VL Tran, M Cabrera-Mora, ...
Frontiers in cell and developmental biology 2, 54, 2014
Mandates: US National Institutes of Health
Clinical recovery of Macaca fascicularis infected with Plasmodium knowlesi
MS Peterson, CJ Joyner, JA Brady, JS Wood, M Cabrera-Mora, CL Saney, ...
Malaria Journal 20 (1), 486, 2021
Mandates: US Department of Defense, US National Institutes of Health
A survey of innovation through duplication in the reduced genomes of twelve parasites
JD DeBarry, JC Kissinger
PLoS One 9 (6), e99213, 2014
Mandates: US National Institutes of Health
Practical recommendations for supporting a systems biology cyberinfrastructure
JD DeBarry, JC Kissinger, MV Nural, SB Pakala, JC Humphrey, ...
Data science journal 19, 24-24, 2020
Mandates: US National Institutes of Health
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