The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 2144 | 2022 |
A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 443 | 2023 |
Pangenome graphs JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ... Annual review of genomics and human genetics 21, 139, 2020 | 205 | 2020 |
The complete sequence of a human Y chromosome A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ... bioRxiv, 2022 | 189 | 2022 |
Telomere-to-telomere assembly of diploid chromosomes with Verkko M Rautiainen, S Nurk, BP Walenz, GA Logsdon, D Porubsky, A Rhie, ... Nature Biotechnology, 1-9, 2023 | 169 | 2023 |
GraphAligner: rapid and versatile sequence-to-graph alignment M Rautiainen, T Marschall Genome biology 21 (1), 1-28, 2020 | 160 | 2020 |
Haplotype threading: accurate polyploid phasing from long reads SD Schrinner, RS Mari, J Ebler, M Rautiainen, L Seillier, JJ Reimer, ... Genome biology 21 (1), 1-22, 2020 | 73 | 2020 |
Bit-parallel sequence-to-graph alignment M Rautiainen, V Mäkinen, T Marschall Bioinformatics 35 (19), 3599-3607, 2019 | 72 | 2019 |
MBG: Minimizer-based sparse de Bruijn Graph construction M Rautiainen, T Marschall Bioinformatics 37 (16), 2476-2478, 2021 | 69 | 2021 |
A graph-based approach to diploid genome assembly S Garg, M Rautiainen, AM Novak, E Garrison, R Durbin, T Marschall Bioinformatics 34 (13), i105-i114, 2018 | 69 | 2018 |
A diploid assembly-based benchmark for variants in the major histocompatibility complex CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ... Nature communications 11 (1), 1-9, 2020 | 61 | 2020 |
The variation and evolution of complete human centromeres GA Logsdon, AN Rozanski, F Ryabov, T Potapova, VA Shepelev, Y Mao, ... bioRxiv, 2023.05. 30.542849, 2023 | 28 | 2023 |
The complete sequence of a human genome. bioRxiv 2021 S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Google Scholar, 0 | 25 | |
Gaps and complex structurally variant loci in phased genome assemblies D Porubsky, MR Vollger, WT Harvey, AN Rozanski, P Ebert, G Hickey, ... Genome Research 33 (4), 496-510, 2023 | 24 | 2023 |
Aligning sequences to general graphs in O (V+ mE) time M Rautiainen, T Marschall bioRxiv, 216127, 2017 | 19 | 2017 |
A strategy for building and using a human reference pangenome B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ... F1000Research 8, 2019 | 16 | 2019 |
Aligning sequences to general graphs in M Rautiainen, T Marschall O (V+ mE), 216-127, 2017 | 12 | 2017 |
Aligning sequences to general graphs in O (V+ mE) time. bioRxiv M Rautiainen, T Marschall Cold Spring Harbor Laboratory, 2017 | 12 | 2017 |
AERON: Transcript quantification and gene-fusion detection using long reads M Rautiainen, DA Durai, Y Chen, L Xin, HM Low, J Göke, T Marschall, ... BioRxiv, 2020 | 11 | 2020 |
The complete sequence of a human genome. bioRxiv, 2021.05. 26.445798 S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... | 9 | 2021 |