Articles with public access mandates - Predrag RadivojacLearn more
Available somewhere: 104
REVEL: an ensemble method for predicting the pathogenicity of rare missense variants
NM Ioannidis, JH Rothstein, V Pejaver, S Middha, SK McDonnell, ...
The American Journal of Human Genetics 99 (4), 877-885, 2016
Mandates: US National Institutes of Health, National Institute for Health Research, UK
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature Methods 10 (3), 221–227, 2013
Mandates: US National Institutes of Health
Automated inference of molecular mechanisms of disease from amino acid substitutions
B Li, VG Krishnan, ME Mort, F Xin, KK Kamati, DN Cooper, SD Mooney, ...
Bioinformatics 25 (21), 2744-2750, 2009
Mandates: US National Institutes of Health
Identification, analysis, and prediction of protein ubiquitination sites
P Radivojac, V Vacic, C Haynes, RR Cocklin, A Mohan, JW Heyen, ...
Proteins: Structure, Function, and Bioinformatics 78 (2), 365-380, 2010
Mandates: US National Institutes of Health
Inferring the molecular and phenotypic impact of amino acid variants with MutPred2
V Pejaver, J Urresti, J Lugo-Martinez, KA Pagel, GN Lin, HJ Nam, M Mort, ...
Nature Communications 11, 5918, 2020
Mandates: US National Institutes of Health, Gordon and Betty Moore Foundation
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D'Andrea, R Lepore, ...
Genome Biology 17 (1), 184, 2016
Mandates: US National Science Foundation, US Department of Energy, Swiss National …
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome Biology 20 (1), 244, 2019
Mandates: US National Science Foundation, Swiss National Science Foundation, US …
Allosteric post-translational modification codes
R Nussinov, CJ Tsai, F Xin, P Radivojac
Trends in Biochemical Sciences 37 (10), 447-455, 2012
Mandates: US National Institutes of Health
Calibration of computational tools for missense variant pathogenicity classification and ClinGen recommendations for PP3/BP4 criteria
V Pejaver, AB Byrne, BJ Feng, KA Pagel, SD Mooney, R Karchin, ...
The American Journal of Human Genetics 109 (12), 2163-2177, 2022
Mandates: US National Institutes of Health
An integrated approach to inferring gene–disease associations in humans
P Radivojac, K Peng, WT Clark, BJ Peters, A Mohan, SM Boyle, ...
Proteins: Structure, Function, and Bioinformatics 72 (3), 1030-1037, 2008
Mandates: US National Institutes of Health
MutPred Splice: machine learning-based prediction of exonic variants that disrupt splicing
M Mort, T Sterne-Weiler, B Li, EV Ball, DN Cooper, P Radivojac, ...
Genome Biology 15 (1), R19, 2014
Mandates: US National Institutes of Health
Bioinformatics curriculum guidelines: toward a definition of core competencies
L Welch, F Lewitter, R Schwartz, C Brooksbank, P Radivojac, B Gaeta, ...
PLoS Computational Biology 10 (3), e1003496, 2014
Mandates: UK Biotechnology and Biological Sciences Research Council
The comparative genomics and complex population history of Papio baboons
J Rogers, M Raveendran, RA Harris, T Mailund, K Leppälä, ...
Science Advances 5 (1), eaau6947, 2019
Mandates: US National Science Foundation, US National Institutes of Health, Howard …
Information-theoretic evaluation of predicted ontological annotations
WT Clark, P Radivojac
Bioinformatics 29 (13), i53-i61, 2013
Mandates: US National Institutes of Health
Estimating the class prior and posterior from noisy positives and unlabeled data
S Jain, M White, P Radivojac
NIPS 2016, Advances In Neural Information Processing Systems, 2693-2701, 2016
Mandates: US National Science Foundation, US National Institutes of Health
Gain and loss of phosphorylation sites in human cancer
P Radivojac, PH Baenziger, MG Kann, ME Mort, MW Hahn, SD Mooney
Bioinformatics 24 (16), i241-i247, 2008
Mandates: US National Institutes of Health
Loss of post-translational modification sites in disease
S Li, LM Iakoucheva, SD Mooney, P Radivojac
PSB 2010, Pacific Symposium on Biocomputing 15, 337-347, 2010
Mandates: US National Institutes of Health
Calibration of multiple in silico tools for predicting pathogenicity of mismatch repair gene missense substitutions
BA Thompson, MS Greenblatt, MP Vallee, JC Herkert, C Tessereau, ...
Human Mutation 34 (1), 255-265, 2013
Mandates: US National Institutes of Health, National Health and Medical Research …
Reproductive longevity predicts mutation rates in primates
GWC Thomas, RJ Wang, A Puri, RA Harris, M Raveendran, D Hughes, ...
Current Biology 28 (19), 3193-3197, 2018
Mandates: US National Institutes of Health
A Bayesian approach to protein inference problem in shotgun proteomics
YF Li, RJ Arnold, Y Li, P Radivojac, Q Sheng, H Tang
Journal of Computational Biology 16 (8), 1183-1193, 2009
Mandates: US National Institutes of Health
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