| Towards automated crystallographic structure refinement with phenix. refine PV Afonine, RW Grosse-Kunstleve, N Echols, JJ Headd, NW Moriarty, ... Acta Crystallographica Section D: Biological Crystallography 68 (4), 352-367, 2012 | 5317 | 2012 |
| Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix D Liebschner, PV Afonine, ML Baker, G Bunkóczi, VB Chen, TI Croll, ... Acta Crystallographica Section D: Structural Biology 75 (10), 861-877, 2019 | 4743 | 2019 |
| Real-space refinement in PHENIX for cryo-EM and crystallography PV Afonine, BK Poon, RJ Read, OV Sobolev, TC Terwilliger, ... Acta Crystallographica Section D: Structural Biology 74 (6), 531-544, 2018 | 2235 | 2018 |
| New tools for the analysis and validation of cryo-EM maps and atomic models PV Afonine, BP Klaholz, NW Moriarty, BK Poon, OV Sobolev, ... Acta Crystallographica Section D: Structural Biology 74 (9), 814-840, 2018 | 626 | 2018 |
| A ‘specificity’pocket inferred from the crystal structures of the complexes of aldose reductase with the pharmaceutically important inhibitors tolrestat and sorbinil A Urzhumtsev, F Tete-Favier, A Mitschler, J Barbanton, P Barth, ... Structure 5 (5), 601-612, 1997 | 298 | 1997 |
| Dimerization of Escherichia coli DNA-gyrase B provides a structural mechanism for activating the ATPase catalytic center L Brino, A Urzhumtsev, M Mousli, C Bronner, A Mitschler, P Oudet, ... Journal of Biological Chemistry 275 (13), 9468-9475, 2000 | 210 | 2000 |
| Aminoglycoside interactions and impacts on the eukaryotic ribosome I Prokhorova, RB Altman, M Djumagulov, JP Shrestha, A Urzhumtsev, ... Proceedings of the National Academy of Sciences 114 (51), E10899-E10908, 2017 | 193 | 2017 |
| FEM: feature-enhanced map PV Afonine, NW Moriarty, M Mustyakimov, OV Sobolev, TC Terwilliger, ... Acta Crystallographica Section D: Biological Crystallography 71 (3), 646-666, 2015 | 183 | 2015 |
| Crystal structure of the 80S yeast ribosome L Jenner, S Melnikov, NG de Loubresse, A Ben-Shem, M Iskakova, ... Current opinion in structural biology 22 (6), 759-767, 2012 | 173 | 2012 |
| Crystallographic model quality at a glance L Urzhumtseva, PV Afonine, PD Adams, A Urzhumtsev Acta Crystallographica Section D: Biological Crystallography 65 (3), 297-300, 2009 | 133 | 2009 |
| A regular pattern of Ig super-motifs defines segmental flexibility as the elastic mechanism of the titin chain E Von Castelmur, M Marino, DI Svergun, L Kreplak, Z Ucurum-Fotiadis, ... Proceedings of the National Academy of Sciences 105 (4), 1186-1191, 2008 | 109 | 2008 |
| phenix. model_vs_data: A high-level tool for the calculation of crystallographic model and data statistics PV Afonine, RW Grosse-Kunstleve, VB Chen, JJ Headd, NW Moriarty, ... Journal of applied crystallography 43 (4), 669-676, 2010 | 105 | 2010 |
| Bulk-solvent and overall scaling revisited: faster calculations, improved results PV Afonine, RW Grosse-Kunstleve, PD Adams, A Urzhumtsev Acta Crystallographica Section D: Biological Crystallography 69 (4), 625-634, 2013 | 104 | 2013 |
| Improvement of protein phases by coarse model modification VY Lunin, AG Urzhumtsev Acta Crystallographica Section A: Foundations of Crystallography 40 (3), 269-277, 1984 | 88 | 1984 |
| Direct low-resolution phasing from electron-density histograms in protein crystallography VY Lunin, AG Urzhumtsev, TP Skovoroda Acta Crystallographica Section A: Foundations of Crystallography 46 (7), 540-544, 1990 | 80 | 1990 |
| On the ab initio solution of the phase problem for macromolecules at very low resolution: the few atoms model method VY Lunin, NL Lunina, TE Petrova, EA Vernoslova, AG Urzhumtsev, ... Acta Crystallographica Section D: Biological Crystallography 51 (6), 896-903, 1995 | 79 | 1995 |
| On macromolecular refinement at subatomic resolution with interatomic scatterers PV Afonine, RW Grosse-Kunstleve, PD Adams, VY Lunin, A Urzhumtsev Acta Crystallographica Section D: Biological Crystallography 63 (11), 1194-1197, 2007 | 78 | 2007 |
| Two conformational states in the crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site J Kondo, A Urzhumtsev, E Westhof Nucleic acids research 34 (2), 676-685, 2006 | 69 | 2006 |
| Likelihood-based refinement. I. Irremovable model errors VY Lunin, PV Afonine, AG Urzhumtsev Acta Crystallographica Section A: Foundations of Crystallography 58 (3), 270-282, 2002 | 66 | 2002 |
| The integrative role of cryo electron microscopy in molecular and cellular structural biology I Orlov, AG Myasnikov, L Andronov, SK Natchiar, H Khatter, B Beinsteiner, ... Biology of the Cell 109 (2), 81-93, 2017 | 65 | 2017 |
