Articles with public access mandates - James A GlazierLearn more
Available somewhere: 77
Multi-scale modeling of tissues using CompuCell3D
MH Swat, GL Thomas, JM Belmonte, A Shirinifard, D Hmeljak, JA Glazier
Methods in cell biology 110, 325-366, 2012
Mandates: US National Institutes of Health
3D multi-cell simulation of tumor growth and angiogenesis
A Shirinifard, JS Gens, BL Zaitlen, NJ Popławski, M Swat, JA Glazier
PloS one 4 (10), e7190, 2009
Mandates: US National Institutes of Health
Contact-inhibited chemotaxis in de novo and sprouting blood-vessel growth
RMH Merks, ED Perryn, A Shirinifard, JA Glazier
PLoS computational biology 4 (9), e1000163, 2008
Mandates: US National Institutes of Health
The 2019 mathematical oncology roadmap
RC Rockne, A Hawkins-Daarud, KR Swanson, JP Sluka, JA Glazier, ...
Physical biology 16 (4), 041005, 2019
Mandates: US National Institutes of Health, UK Medical Research Council
libRoadRunner: a high performance SBML simulation and analysis library
ET Somogyi, JM Bouteiller, JA Glazier, M König, JK Medley, MH Swat, ...
Bioinformatics 31 (20), 3315-3321, 2015
Mandates: US National Institutes of Health
A multi-cell, multi-scale model of vertebrate segmentation and somite formation
SD Hester, JM Belmonte, JS Gens, SG Clendenon, JA Glazier
PLoS computational biology 7 (10), e1002155, 2011
Mandates: US National Institutes of Health
Somites without a clock
AS Dias, I de Almeida, JM Belmonte, JA Glazier, CD Stern
Science 343 (6172), 791-795, 2014
Mandates: US National Institutes of Health, UK Medical Research Council
Using digital twins in viral infection
R Laubenbacher, JP Sluka, JA Glazier
Science 371 (6534), 1105-1106, 2021
Mandates: US National Institutes of Health
Modeling gastrulation in the chick embryo: formation of the primitive streak
B Vasiev, A Balter, M Chaplain, JA Glazier, CJ Weijer
PLoS One 5 (5), e10571, 2010
Mandates: US National Institutes of Health
Multicell simulations of development and disease using the CompuCell3D simulation environment
MH Swat, SD Hester, AI Balter, RW Heiland, BL Zaitlen, JA Glazier
Systems Biology, 361-428, 2009
Mandates: US National Institutes of Health
Simulation of single-species bacterial-biofilm growth using the Glazier-Graner-Hogeweg model and the CompuCell3D modeling environment
NJ Popławski, A Shirinifard, M Swat, JA Glazier
Mathematical biosciences and engineering: MBE 5 (2), 355, 2008
Mandates: US National Institutes of Health
Building digital twins of the human immune system: toward a roadmap
R Laubenbacher, A Niarakis, T Helikar, G An, B Shapiro, RS Malik-Sheriff, ...
NPJ digital medicine 5 (1), 64, 2022
Mandates: US National Science Foundation, US Department of Defense, US National …
Computer simulations of cell sorting due to differential adhesion
Y Zhang, GL Thomas, M Swat, A Shirinifard, JA Glazier
PloS one 6 (10), e24999, 2011
Mandates: US National Institutes of Health
A liver-centric multiscale modeling framework for xenobiotics
JP Sluka, X Fu, M Swat, JM Belmonte, A Cosmanescu, SG Clendenon, ...
PloS one 11 (9), e0162428, 2016
Mandates: US National Institutes of Health
Front instabilities and invasiveness of simulated avascular tumors
NJ Popławski, U Agero, JS Gens, M Swat, JA Glazier, ARA Anderson
Bulletin of mathematical biology 71, 1189-1227, 2009
Mandates: US National Institutes of Health
Learning everywhere: Pervasive machine learning for effective high-performance computation
G Fox, JA Glazier, JCS Kadupitiya, V Jadhao, M Kim, J Qiu, JP Sluka, ...
2019 IEEE International Parallel and Distributed Processing Symposium …, 2019
Mandates: US National Science Foundation, US Department of Energy, US National …
A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to …
TJ Sego, JO Aponte-Serrano, J Ferrari Gianlupi, SR Heaps, K Breithaupt, ...
PLoS computational biology 16 (12), e1008451, 2020
Mandates: US National Science Foundation, US National Institutes of Health, German …
Adhesion failures determine the pattern of choroidal neovascularization in the eye: a computer simulation study
A Shirinifard, JA Glazier, M Swat, JS Gens, F Family, Y Jiang, ...
PLoS computational biology 8 (5), e1002440, 2012
Mandates: US National Institutes of Health
Iterative community-driven development of a SARS-CoV-2 tissue simulator
M Getz, Y Wang, G An, M Asthana, A Becker, C Cockrell, N Collier, ...
BioRxiv, 2020.04. 02.019075, 2020
Mandates: US National Science Foundation, US National Institutes of Health, Natural …
A Notch positive feedback in the intestinal stem cell niche is essential for stem cell self‐renewal
KY Chen, T Srinivasan, KL Tung, JM Belmonte, L Wang, PKL Murthy, ...
Molecular Systems Biology 13 (4), 927, 2017
Mandates: US National Science Foundation, US Department of Defense, US National …
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