Articles with public access mandates - David JonesLearn more
OverallBBSRCMRCEuropean CommissionNIHWellcomeCancer Research UKNSFNSFCDOEVersus Arthritis, UKGovernment of ItalySNSFARCFWONSERCAcademy of FinlandMTAOTKANIHRGovernment of SpainUK Research & InnovationGatesGBMFNHMRCCIHRDFGResearch Council of LithuaniaBHFBlood Cancer UKParkinson's UKANRBMBFNCNHealth Data Research, UKHFSP
Not available anywhere: 2
The contribution of intrinsic disorder prediction to the elucidation of protein function
D Cozzetto, DT Jones
Current opinion in structural biology 23 (3), 467-472, 2013
Mandates: UK Biotechnology and Biological Sciences Research Council
Opportunities and limitations in applying coevolution-derived contacts to protein structure prediction
S Tetchner, T Kosciolek, DT Jones
Bio-Algorithms and Med-Systems 10 (4), 243-254, 2014
Mandates: Wellcome Trust
Recused: 2
The Genome3D Consortium for Structural Annotations of Selected Model Organisms
VP Waman, TL Blundell, DWA Buchan, J Gough, D Jones, L Kelley, ...
Protein Structure Prediction, 27-67, 2020
Mandates: UK Biotechnology and Biological Sciences Research Council
Responsible authors: C Orengo
Sequence Covariation Analysis in Biological Polymers
WR Taylor, S Kandathil, DT Jones
Handbook of Statistical Genomics: Two Volume Set, 325-30, 2019
Mandates: Cancer Research UK, UK Medical Research Council, Wellcome Trust
Responsible authors: WR Taylor
Available somewhere: 50
Classification of intrinsically disordered regions and proteins
R van der Lee, M Buljan, B Lang, RJ Weatheritt, GW Daughdrill, ...
Chemical reviews 114 (13), 6589-6631, 2014
Mandates: US National Institutes of Health, Research Foundation (Flanders), Canadian …
Scalable web services for the PSIPRED Protein Analysis Workbench
DWA Buchan, F Minneci, TCO Nugent, K Bryson, DT Jones
Nucleic acids research 41 (W1), W349-W357, 2013
Mandates: UK Biotechnology and Biological Sciences Research Council, UK Medical …
The PSIPRED Protein Analysis Workbench: 20 years on
DWA Buchan, DT Jones
Nucleic acids research 47 (W1), W402-W407, 2019
Mandates: UK Biotechnology and Biological Sciences Research Council
A guide to machine learning for biologists
JG Greener, SM Kandathil, L Moffat, DT Jones
Nature Reviews Molecular Cell Biology 23 (1), 40-55, 2022
Mandates: European Commission
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
Mandates: US National Institutes of Health
DISOPRED3: precise disordered region predictions with annotated protein-binding activity
DT Jones, D Cozzetto
Bioinformatics 31 (6), 857-863, 2014
Mandates: UK Biotechnology and Biological Sciences Research Council
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 1-19, 2016
Mandates: US National Science Foundation, US Department of Energy, Swiss National …
MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins
DT Jones, T Singh, T Kosciolek, S Tetchner
Bioinformatics 31 (7), 999-1006, 2014
Mandates: UK Biotechnology and Biological Sciences Research Council, Wellcome Trust
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
Mandates: US National Science Foundation, Swiss National Science Foundation, US …
Critical assessment of protein intrinsic disorder prediction
M Necci, D Piovesan, SCE Tosatto
Nature methods 18 (5), 472-481, 2021
Mandates: US National Science Foundation, US National Institutes of Health, Australian …
High precision in protein contact prediction using fully convolutional neural networks and minimal sequence features
DT Jones, SM Kandathil
Bioinformatics 34 (19), 3308-3315, 2018
Mandates: Versus Arthritis, UK, Cancer Research UK, UK Medical Research Council …
Deep learning extends de novo protein modelling coverage of genomes using iteratively predicted structural constraints
JG Greener, SM Kandathil, DT Jones
Nature Communications 10 (1), 1-13, 2019
Mandates: Cancer Research UK, UK Medical Research Council, Wellcome Trust, European …
Outcome of a workshop on applications of protein models in biomedical research
T Schwede, A Sali, B Honig, M Levitt, HM Berman, D Jones, SE Brenner, ...
Structure 17 (2), 151-159, 2009
Mandates: US National Institutes of Health
Design of metalloproteins and novel protein folds using variational autoencoders
JG Greener, L Moffat, DT Jones
Scientific Reports 8 (1), 16189, 2018
Mandates: Versus Arthritis, UK, UK Biotechnology and Biological Sciences Research …
De Novo Structure Prediction of Globular Proteins Aided by Sequence Variation-Derived Contacts
T Kosciolek, DT Jones
PloS one 9 (3), e92197, 2014
Mandates: US National Institutes of Health, UK Biotechnology and Biological Sciences …
Evaluation of predictions in the CASP10 model refinement category
T Nugent, D Cozzetto, DT Jones
Proteins: Structure, Function, and Bioinformatics 82 (S2), 98-111, 2014
Mandates: UK Biotechnology and Biological Sciences Research Council, UK Medical …
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