| Trimmomatic: a flexible trimmer for Illumina sequence data AM Bolger, M Lohse, B Usadel Bioinformatics 30 (15), 2114-2120, 2014 | 53254 | 2014 |
| RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics M Lohse, AM Bolger, A Nagel, AR Fernie, JE Lunn, M Stitt, B Usadel Nucleic acids research 40 (W1), W622-W627, 2012 | 913 | 2012 |
| The genome of the stress-tolerant wild tomato species Solanum pennellii A Bolger, F Scossa, ME Bolger, C Lanz, F Maumus, T Tohge, ... Nature genetics 46 (9), 1034-1038, 2014 | 501 | 2014 |
| Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato D Koenig, JM Jiménez-Gómez, S Kimura, D Fulop, DH Chitwood, ... Proceedings of the National Academy of Sciences 110 (28), E2655-E2662, 2013 | 399 | 2013 |
| MapMan4: a refined protein classification and annotation framework applicable to multi-omics data analysis R Schwacke, GY Ponce-Soto, K Krause, AM Bolger, B Arsova, A Hallab, ... Molecular plant 12 (6), 879-892, 2019 | 375 | 2019 |
| Tomato facultative parthenocarpy results from SlAGAMOUS‐LIKE 6 loss of function C Klap, E Yeshayahou, AM Bolger, T Arazi, SK Gupta, S Shabtai, ... Plant Biotechnology Journal 15 (5), 634-647, 2017 | 326 | 2017 |
| De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing MHW Schmidt, A Vogel, AK Denton, B Istace, A Wormit, H van de Geest, ... The Plant Cell 29 (10), 2336-2348, 2017 | 223 | 2017 |
| Evolution of a Complex Locus for Terpene Biosynthesis in Solanum Y Matsuba, TTH Nguyen, K Wiegert, V Falara, E Gonzales-Vigil, B Leong, ... The Plant Cell 25 (6), 2022-2036, 2013 | 168 | 2013 |
| Footprints of parasitism in the genome of the parasitic flowering plant Cuscuta campestris A Vogel, R Schwacke, AK Denton, B Usadel, J Hollmann, K Fischer, ... Nature communications 9 (1), 2515, 2018 | 162 | 2018 |
| Dual resistance of melon to Fusarium oxysporum races 0 and 2 and to Papaya ring-spot virus is controlled by a pair of head-to-head-oriented NB-LRR genes of unusual architecture Y Brotman, M Normantovich, Z Goldenberg, Z Zvirin, I Kovalski, N Stovbun, ... Molecular Plant 6 (1), 235-238, 2013 | 102 | 2013 |
| Algorithm-driven artifacts in median polish summarization of microarray data FM Giorgi, AM Bolger, M Lohse, B Usadel BMC bioinformatics 11, 1-12, 2010 | 69 | 2010 |
| Fluctuating light interacts with time of day and leaf development stage to reprogram gene expression T Schneider, A Bolger, J Zeier, S Preiskowski, V Benes, S Trenkamp, ... Plant Physiology 179 (4), 1632-1657, 2019 | 61 | 2019 |
| Computational aspects underlying genome to phenome analysis in plants AM Bolger, H Poorter, K Dumschott, ME Bolger, D Arend, S Osorio, ... The Plant Journal 97 (1), 182-198, 2019 | 59 | 2019 |
| Identification of candidate genes for phenolics accumulation in tomato fruit A Di Matteo, V Ruggieri, A Sacco, MM Rigano, F Carriero, A Bolger, ... Plant science 205, 87-96, 2013 | 55 | 2013 |
| Metabolic adaptation, a specialized leaf organ structure and vascular responses to diurnal N2 fixation by Nostoc azollae sustain the astonishing productivity of Azolla ferns … P Brouwer, A Bräutigam, VA Buijs, AOE Tazelaar, A Van der Werf, ... Frontiers in Plant Science 8, 442, 2017 | 50 | 2017 |
| Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N2 but may denitrify LW Dijkhuizen, P Brouwer, H Bolhuis, GJ Reichart, N Koppers, B Huettel, ... New Phytologist 217 (1), 453-466, 2018 | 39 | 2018 |
| De Novo Transcriptome Analysis of Durum Wheat Flag Leaves Provides New Insights Into the Regulatory Response to Elevated CO2 and High Temperature R Vicente, AM Bolger, R Martínez-Carrasco, P Pérez, E Gutiérrez, ... Frontiers in Plant Science 10, 1605, 2019 | 38 | 2019 |
| Isolation of open chromatin identifies regulators of systemic acquired resistance S Baum, EM Reimer-Michalski, A Bolger, AJ Mantai, V Benes, B Usadel, ... Plant Physiology 181 (2), 817-833, 2019 | 35 | 2019 |
| Streptomyces thermoautotrophicus does not fix nitrogen D MacKellar, L Lieber, JS Norman, A Bolger, C Tobin, JW Murray, ... Scientific reports 6 (1), 20086, 2016 | 35 | 2016 |
| Helixer–de novo Prediction of Primary Eukaryotic Gene Models Combining Deep Learning and a Hidden Markov Model F Holst, A Bolger, C Günther, J Maß, S Triesch, F Kindel, N Kiel, N Saadat, ... BioRxiv, 2023.02. 06.527280, 2023 | 18 | 2023 |
Björn UsadelProfessor of Biological Data Science,Heinrich-Heine-University Düsseldorf, Forschungszentrum JülichVerified email at fz-juelich.de
