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Shiqi Xie
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Year
Multiplexed engineering and analysis of combinatorial enhancer activity in single cells
S Xie, J Duan, B Li, P Zhou, GC Hon
Molecular cell 66 (2), 285-299. e5, 2017
3232017
In situ capture of chromatin interactions by biotinylated dCas9
X Liu, Y Zhang, Y Chen, M Li, F Zhou, K Li, H Cao, M Ni, Y Liu, Z Gu, ...
Cell 170 (5), 1028-1043. e19, 2017
3002017
Unusual architecture of the p7 channel from hepatitis C virus
B OuYang, S Xie, MJ Berardi, X Zhao, J Dev, W Yu, B Sun, JJ Chou
Nature 498 (7455), 521-525, 2013
2922013
PEDV ORF3 encodes an ion channel protein and regulates virus production
K Wang, W Lu, J Chen, S Xie, H Shi, H Hsu, W Yu, K Xu, C Bian, ...
FEBS letters 586 (4), 384-391, 2012
2162012
Viral proteins function as ion channels
K Wang, S Xie, B Sun
Biochimica et Biophysica Acta (BBA)-Biomembranes 1808 (2), 510-515, 2011
1792011
The ORF4a protein of human coronavirus 229E functions as a viroporin that regulates viral production
R Zhang, K Wang, W Lv, W Yu, S Xie, K Xu, W Schwarz, S Xiong, B Sun
Biochimica et Biophysica Acta (BBA)-Biomembranes 1838 (4), 1088-1095, 2014
812014
Frequent sgRNA-barcode recombination in single-cell perturbation assays
S Xie, A Cooley, D Armendariz, P Zhou, GC Hon
PLoS One 13 (6), e0198635, 2018
602018
DIDS blocks a chloride-dependent current that is mediated by the 2B protein of enterovirus 71
S Xie, K Wang, W Yu, W Lu, K Xu, J Wang, B Ye, W Schwarz, Q Jin, B Sun
Cell Research 21 (8), 1271-1275, 2011
512011
DNA barcoding on subsets of three families in Aves
Y Cai, B Yue, W Jiang, S Xie, J Li, M Zhou
Mitochondrial DNA 21 (3-4), 132-137, 2010
372010
Global analysis of enhancer targets reveals convergent enhancer-driven regulatory modules
S Xie, D Armendariz, P Zhou, J Duan, GC Hon
Cell reports 29 (9), 2570-2578. e5, 2019
282019
IFN-λ4 desensitizes the response to IFN-α treatment in chronic hepatitis C through long-term induction of USP18
W Fan, S Xie, X Zhao, N Li, C Chang, L Li, G Yu, X Chi, Y Pan, J Niu, ...
Journal of General Virology 97 (9), 2210-2220, 2016
272016
Rational reprogramming of cellular states by combinatorial perturbation
J Duan, B Li, M Bhakta, S Xie, P Zhou, NV Munshi, GC Hon
Cell reports 27 (12), 3486-3499. e6, 2019
262019
Transcriptional regulation of the Hippo pathway: current understanding and insights from single-cell technologies
S Paul, S Xie, X Yao, A Dey
Cells 11 (14), 2225, 2022
102022
Computational identification of clonal cells in single-cell CRISPR screens
Y Wang, S Xie, D Armendariz, GC Hon
BMC genomics 23 (1), 135, 2022
92022
CHD-associated enhancers shape human cardiomyocyte lineage commitment
DA Armendariz, SC Goetsch, A Sundarrajan, S Sivakumar, Y Wang, S Xie, ...
Elife 12, e86206, 2023
62023
Experimental and computational approaches for single-cell enhancer perturbation assay
S Xie, GC Hon
Computational Methods for Single-Cell Data Analysis, 203-221, 2019
52019
Tissue-specific gene expression prediction associates vitiligo with SUOX through an active enhancer
Z Qi, S Xie, R Chen, HA Aisa, GC Hon, Y Guan
bioRxiv, 337196, 2018
42018
Epiregulon: Inference of single-cell transcription factor activity to dissect mechanisms of lineage plasticity and drug response
T Włodarczyk, A Lun, D Wu, S Menon, S Toneyan, K Seidel, L Wang, ...
bioRxiv, 2023.11. 27.568955, 2023
12023
Enhancer regulatory networks globally connect non-coding breast cancer loci to cancer genes
Y Wang, D Armendariz, L Wang, H Zhao, S Xie, GC Hon
bioRxiv, 2023
12023
Systematic perturbation screens decode regulators of inflammatory macrophage states and identify a role for TNF mRNA m6A modification
SM Haag, S Xie, C Eidenschenk, JP Fortin, M Callow, M Costa, A Lun, ...
bioRxiv, 2024.04. 12.589122, 2024
2024
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