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Ryan P Bartelme
Ryan P Bartelme
Scientist I, Bioinformatics at Pivot Bio
Verified email at pivotbio.com
Title
Cited by
Cited by
Year
Freshwater Recirculating Aquaculture System Operations Drive Biofilter Bacterial Community Shifts around a Stable Nitrifying Consortium of Ammonia-Oxidizing Archaea and …
RP Bartelme, SL McLellan, RJ Newton
Frontiers in microbiology 8, 101, 2017
2622017
Stripping away the soil: plant growth promoting microbiology opportunities in aquaponics
RP Bartelme, BO Oyserman, JE Blom, OJ Sepulveda-Villet, RJ Newton
Frontiers in microbiology 9, 8, 2018
1212018
Influence of substrate concentration on the culturability of heterotrophic soil microbes isolated by high-throughput dilution-to-extinction cultivation
RP Bartelme, JM Custer, CL Dupont, JL Espinoza, M Torralba, B Khalili, ...
Msphere 5 (1), 10.1128/msphere. 00024-20, 2020
452020
Component microenvironments and system biogeography structure microorganism distributions in recirculating aquaculture and aquaponic systems
RP Bartelme, MC Smith, OJ Sepulveda-Villet, RJ Newton
Msphere 4 (4), 10.1128/msphere. 00143-19, 2019
442019
Component microenvironments and system biogeography structure microorganism distributions in recirculating aquaculture and aquaponic systems. mSphere 4, 1–15
RP Bartelme, MC Smith, OJ Sepulveda-Villet, RJ Newton
182019
Complete genome sequence of the fish pathogen Flavobacterium columnare strain C# 2
RP Bartelme, RJ Newton, Y Zhu, N Li, BR LaFrentz, MJ McBride
Genome Announcements 4 (3), 10.1128/genomea. 00624-16, 2016
132016
CyVerse: Cyberinfrastructure for open science
TL Swetnam, PB Antin, R Bartelme, A Bucksch, D Camhy, G Chism, I Choi, ...
PLoS Computational Biology 20 (2), e1011270, 2024
82024
Draft genome sequence of the fish pathogen Flavobacterium columnare strain MS-FC-4
RP Bartelme, P Barbier, RS Lipscomb, SE LaPatra, RJ Newton, ...
Genome Announcements 6 (20), 10.1128/genomea. 00429-18, 2018
72018
From DNA sequences to microbial ecology: Wrangling NEON soil microbe data with the neonMicrobe R package
C Qin, R Bartelme, YA Chung, D Fairbanks, Y Lin, D Liptzin, C Muscarella, ...
Ecosphere 12 (11), e03842, 2021
62021
Complete genome sequence of the fish pathogen Flavobacterium columnare strain C# 2. Genome Announc 4 (3): e00624-16
RP Bartelme, RJ Newton, Y Zhu, N Li, BR LaFrentz, MJ McBride
62016
Predicting phenotype from multi-scale genomic and environment data using neural networks and knowledge graphs
AE Thessen, R Bartelme, M Behrisch, EJ Cain, R Chang, I Debnath, ...
2020 ESA Annual Meeting (August 3-6), 2020
22020
Ten simple rules for organizing a data science workshop
A Ponsero, R Bartelme, G de Oliveira Almeida, A Bigelow, R Tuteja, ...
PLoS Computational Biology 16 (10), e1008226, 2020
12020
High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains …
MR Kridler, A Howe, JA Legins, C Guerrero, RP Bartelme, B Taylor, ...
Access Microbiology, 000884. v1, 2024
2024
Draft genome sequences of Arthrobacter sp. AZCC_0090 and Mycobacterium sp. AZCC_0083 isolated from oligotrophic subsurface forest soil in the Santa …
MR Kridler, IA Viney, JM Custer, B Schlottman, R Bartelme, P Carini
Microbiology Resource Announcements 13 (3), e01089-23, 2024
2024
Do androids dream of electric sorghum?: Predicting Phenotypes from Multi-Scale Genomic and Environmental Data using Neural Networks and Knowledge Graphs
RP Bartelme, M Behrisch, EJ Cain, R Chang, I Debnath, B Heidorn, ...
OSF Preprints, 2020
2020
Cultivating Ecosystems: Microbial Communities in Recirculating Aquaculture Systems
R Bartelme
University of Wisconsin - Milwaukee, 2018
2018
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Articles 1–16