David R Kelley

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Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityEmail yang diverifikasi di jhu.edu
Cole TrapnellAssociate Professor, Dept. of Genome Sciences, University of WashingtonEmail yang diverifikasi di uw.edu
David Gillis HendricksonEmail yang diverifikasi di calicolabs.com
Loyal A. GoffJohns Hopkins Institute of Genetic MedicineEmail yang diverifikasi di jhmi.edu
Geo PerteaData/Software Engineer, Lieber Institute for Brain DevelopmentEmail yang diverifikasi di jhu.edu
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityEmail yang diverifikasi di cs.jhu.edu
Lior PachterBren Professor of Computational Biology, CaltechEmail yang diverifikasi di caltech.edu
Adam RobertsGoogle DeepMindEmail yang diverifikasi di google.com
Daehwan KimUniversity of Texas Southwestern Medical CenterEmail yang diverifikasi di UTSouthwestern.edu
James YorkeDist. Univ. Research Prof of Math and Physics, Univ. of MarylandEmail yang diverifikasi di umd.edu
Aleksey V ZiminResearch Scientist, Department of Biomedical Engineering, Johns Hopkins UnviersityEmail yang diverifikasi di jhu.edu
Martin SauvageauAssistant Professor, Montreal Clinical Research Institute - IRCMEmail yang diverifikasi di ircm.qc.ca
Ezgi HacisuleymanPostdoctoral fellow at Rockefeller UniversityEmail yang diverifikasi di mail.rockefeller.edu
Mihai PopProfessor of Computer Science, University of Maryland, College ParkEmail yang diverifikasi di umd.edu
Daniel D SommerNational Biodefense Analysis and Countermeasures CenterEmail yang diverifikasi di nbacc.dhs.gov
Carl KingsfordProfessor, Computational Biology Department, School of Computer Science, CarnegieEmail yang diverifikasi di cs.cmu.edu
Bo LiuEngineering Manager of Data Infrastructure, Square

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David R Kelley

Calico Labs

Email yang diverifikasi di calicolabs.com - Beranda

Computational Biology


Judul Urutkan menurut kutipan Urutkan menurut tahun Urutkan menurut judul	Dikutip oleh Dikutip oleh	Tahun
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ... Nature Protocols 7 (3), 562-578, 2012	13062	2012
A whole-genome assembly of the domestic cow, Bos taurus AV Zimin, AL Delcher, L Florea, DR Kelley, MC Schatz, D Puiu, ... Genome biology 10, 1-10, 2009	1373	2009
Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks DR Kelley, J Snoek, JL Rinn Genome research 26 (7), 990-999, 2016	1049	2016
Quake: quality-aware detection and correction of sequencing errors DR Kelley, MC Schatz, SL Salzberg Genome Biology 11 (11), R116, 2010	735	2010
Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre E Hacisuleyman, LA Goff, C Trapnell, A Williams, J Henao-Mejia, L Sun, ... Nature structural & molecular biology 21 (2), 198-206, 2014	695	2014
Effective gene expression prediction from sequence by integrating long-range interactions Ž Avsec, V Agarwal, D Visentin, JR Ledsam, A Grabska-Barwinska, ... Nature methods 18 (10), 1196-1203, 2021	657	2021
Assemblathon 1: A competitive assessment of de novo short read assembly methods DA Earl, K Bradnam, JS John, A Darling, D Lin, J Faas, HOK Yu, B Vince, ... Genome Research, 2011	636	2011
Transposable elements reveal a stem cell specific class of long noncoding RNAs DR Kelley, JL Rinn Genome Biology 13 (11), R107, 2012	603	2012
Transcriptional and epigenetic dynamics during specification of human embryonic stem cells CA Gifford, MJ Ziller, H Gu, C Trapnell, J Donaghey, A Tsankov, ... Cell 153 (5), 1149-1163, 2013	494	2013
Long noncoding RNAs regulate adipogenesis L Sun, LA Goff, C Trapnell, R Alexander, KA Lo, E Hacisuleyman, ... Proceedings of the National Academy of Sciences 110 (9), 3387-3392, 2013	488	2013
Sequential regulatory activity prediction across chromosomes with convolutional neural networks DR Kelley, YA Reshef, M Bileschi, D Belanger, CY McLean, J Snoek Genome research 28 (5), 739-750, 2018	449	2018
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99^A SL Salzberg, DD Sommer, MC Schatz, AM Phillippy, PD Rabinowicz, ... BMC genomics 9, 1-16, 2008	432	2008
Widespread RNA binding by chromatin-associated proteins D G Hendrickson, DR Kelley, D Tenen, B Bernstein, JL Rinn Genome biology 17, 1-18, 2016	229	2016
Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering DR Kelley, B Liu, AL Delcher, M Pop, SL Salzberg Nucleic Acids Research 40 (1), e9-e9, 2012	214	2012
Predicting 3D genome folding from DNA sequence with Akita G Fudenberg, DR Kelley, KS Pollard Nature Methods 17 (11), 1111-1117, 2020	198	2020
Genetic determinants and epigenetic effects of pioneer-factor occupancy J Donaghey, S Thakurela, J Charlton, JS Chen, ZD Smith, H Gu, R Pop, ... Nature genetics 50 (2), 250-258, 2018	177	2018
Cross-species regulatory sequence activity prediction DR Kelley PLOS Computational Biology 16 (7), e1008050, 2020	170	2020
Solo: Doublet Identification in Single-Cell RNA-Seq via Semi-Supervised Deep Learning NJ Bernstein, NL Fong, I Lam, MA Roy, DG Hendrickson, DR Kelley Cell Systems 11 (1), 95-101. e5, 2020	156	2020
Clustering metagenomic sequences with interpolated Markov models D Kelley, S Salzberg BMC Bioinformatics 11 (1), 544, 2010	143	2010
Murine single-cell RNA-seq reveals cell-identity-and tissue-specific trajectories of aging JC Kimmel, L Penland, ND Rubinstein, DG Hendrickson, DR Kelley, ... Genome research 29 (12), 2088-2103, 2019	133	2019

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