Jason Ernst

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Manolis KellisProfessor of Computer Science, MIT and Broad InstituteEmail verificata su mit.edu
Ziv Bar-JosephProfessor of Computational Biology and Machine Learning, School of Computer Science, Carnegie Mellon UniversityEmail verificata su andrew.cmu.edu
Pouya KheradpourVerily Life SciencesEmail verificata su mit.edu
Tarjei S. MikkelsenEmail verificata su alum.mit.edu
Petko (Pete) FizievIllumina Artificial Intelligence LabEmail verificata su illumina.com
Charles B. EpsteinThe Broad InstituteEmail verificata su broadinstitute.org
Bradley BernsteinProfessor of Pathology, Harvard UniversityEmail verificata su broadinstitute.org
matteo pellegriniuniversity of california Los AngelesEmail verificata su mcdb.ucla.edu
Eleazar EskinUniversity of California, Los AngelesEmail verificata su cs.ucla.edu
Lucas D. WardAlnylam PharmaceuticalsEmail verificata su alnylam.com
Manching KuGenentechEmail verificata su gene.com
Ross C. HardisonProfessor Emeritus of Biochemistry and Molecular Biology, The Pennsylvania State UniversityEmail verificata su psu.edu
Qasim BegMicrobiology Lecturer Boston UniversityEmail verificata su bu.edu
Zoltan N. OltvaiUniversity of RochesterEmail verificata su urmc.rochester.edu
Anshul KundajeAssociate Professor, Dept. of Genetics, Dept. of Computer Science, Stanford UniversityEmail verificata su stanford.edu
constantinos chronisAssistant Professor at UICEmail verificata su uic.edu
Bing Ren, Ph.D.University of California, San DiegoEmail verificata su ucsd.edu
Ewan BirneyDirector, EMBL-EBIEmail verificata su ebi.ac.uk
Michael M. HoffmanChair and Senior Scientist, University Health Network/Associate Professor, University of TorontoEmail verificata su utoronto.ca
William Stafford NobleProfessor of Genome Sciences, University of WashingtonEmail verificata su uw.edu

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Jason Ernst

Professor, University of California, Los Angeles

Email verificata su ucla.edu - Home page

Computational Biology Bioinformatics Genomics Epigenomics Machine Learning


Titolo Ordina per citazioni Ordina per anno Ordina per titolo	Citata da Citata da	Anno
An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 2012	17017	2012
Integrative analysis of 111 reference human epigenomes A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ... Nature 518 (7539), 317-330, 2015	6225	2015
Mapping and analysis of chromatin state dynamics in nine human cell types J Ernst, P Kheradpour, TS Mikkelsen, N Shoresh, LD Ward, CB Epstein, ... Nature 473 (7345), 43-49, 2011	3333	2011
ChromHMM: automating chromatin-state discovery and characterization J Ernst, M Kellis Nature Methods 9 (3), 215-216, 2012	2515	2012
STEM: a tool for the analysis of short time series gene expression data J Ernst, Z Bar-Joseph BMC bioinformatics 7, 1-11, 2006	1528	2006
A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011	1475	2011
Discovery and characterization of chromatin states for systematic annotation of the human genome J Ernst, M Kellis Nature Biotechnology 28, 817-825, 2010	1288	2010
A high-resolution map of human evolutionary constraint using 29 mammals K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ... Nature 478 (7370), 476-482, 2011	1284	2011
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ... Science 330 (6012), 1787-1797, 2010	1088	2010
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster PV Kharchenko, AA Alekseyenko, YB Schwartz, A Minoda, NC Riddle, ... Nature 471 (7339), 480-485, 2011	988	2011
Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci PL De Jager, G Srivastava, K Lunnon, J Burgess, LC Schalkwyk, L Yu, ... Nature neuroscience 17 (9), 1156-1163, 2014	934	2014
Chromatin-state discovery and genome annotation with ChromHMM J Ernst, M Kellis Nature protocols 12 (12), 2478-2492, 2017	718	2017
Integrative annotation of chromatin elements from ENCODE data MM Hoffman, J Ernst, SP Wilder, A Kundaje, RS Harris, M Libbrecht, ... Nucleic acids research, gks1284, 2013	613	2013
Chromosome conformation elucidates regulatory relationships in developing human brain H Won, L de La Torre-Ubieta, JL Stein, NN Parikshak, J Huang, ... Nature 538 (7626), 523-527, 2016	588	2016
Clustering short time series gene expression data J Ernst, GJ Nau, Z Bar-Joseph Bioinformatics 21 (suppl_1), i159-i168, 2005	576	2005
Cooperative binding of transcription factors orchestrates reprogramming C Chronis, P Fiziev, B Papp, S Butz, G Bonora, S Sabri, J Ernst, K Plath Cell 168 (3), 442-459. e20, 2017	520	2017
Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity QK Beg, A Vazquez, J Ernst, MA de Menezes, Z Bar-Joseph, AL Barabási, ... Proceedings of the National Academy of Sciences 104 (31), 12663-12668, 2007	429	2007
Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues J Ernst, M Kellis Nature biotechnology 33 (4), 364-376, 2015	399	2015
Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells O Ram, A Goren, I Amit, N Shoresh, N Yosef, J Ernst, M Kellis, M Gymrek, ... Cell 147 (7), 1628-1639, 2011	396	2011
Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay P Kheradpour, J Ernst, A Melnikov, P Rogov, L Wang, X Zhang, J Alston, ... Genome research 23 (5), 800-811, 2013	362	2013

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